Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9315g00001 ATGAAGCAATTCAAACCTCGCTTGCCCTTCCTTGTGCAAGAACGGACCATTGAAGCTCTAGCTAGTTTGTACGGCAATCCCATACTCTCGGCTAAACTAGCAAATTCTGATGCAAAACATTTGCTTGTTGGTTTGATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTATAAAAGCTCTGTTGACACTATGCAAAAGTGAAGGCAGCCTATGGCGCGCACTTCAGGGCCGTGATGGAGTTCAGCTATTGATATCTCTTCTTGGTCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCCTTGCTTTGCCTTTTATCAAATGAAAATGATGAAAGTAAATGGGCAATTACCGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTAGAAACAGGATCTGCAAAAGCAAAGGAAGATTCGGCAAGAATCCTTAAGAACTTGTGCAATCATAGTGAAGATATACGTGCTTGCGTTGAAAGTGCAGATGCTGTTCCTGCGTTGTTGTGGCTATTGAAGAATGGAAGTCCTAATGGGAAGGATATTGCAGCAAAGACCATAAATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCGTTATTGACAAGTGACCTTCCTGATTCTAAGGTATATGTTTTGGATGCTTTGAGAAGTATGCTTTGTGTTGCTCCGCTTAGCGACATTTTACGTGAAGGTAGTGCTGCTGGTGATGCATTTGATACTGTGATAATGTTATTGAGCTCTACCAAGGAAGAAACTCAGGCAAAATCTGCGTCAGCTCTGGCCGAAATTTTTGAAGCAAGGAAAGATTTGCGTGAAAGTAGCATTGCCATCAAAGCTCTTTGTTCAGCCATGAAATTGCTTAATGTTGAATCCGAAAGTATCCTAATGGAGTCMTCAAACTGCCTGGCTTCAATATTTCTTTCCATCAAAGAGAACAAGGATGTAGCAGCTGTTGCKAGAGATACATTATCGCCGYTAGTTGCACTAGCTAACTCTTCGATTTTGGAAGTGGCAGAAATGGCTATAGGTGCTGTAGCAAATCTTATTTTGGATATTGACATAGCAAAGAAAGTTGCTGCAGAAGAAGTTATCTTGCCGGCTACTAGAGTACTGAACGAAGGCACAATTTCTGGAAAAACTCATGCTGCAGCAGCAACTGCTCGCCTTTTACATTCTCATAAAGTTGATAATGCTGTTACTGATTGTGTGGATCGTGCCGGAACTGTTCTTGCATTAGTTTCTTTTTTGGATTCTTCTGTCAATGGATCTATTGACACATCAGAGGCTTTAGAAGCACTTGTCATTCTGTCCAGGTCAGAAGAGACCGGCGCAAATATTAAACCGGCATGTGCAGTTTTGGCTGAATTCCCTAAAAGCTTAATCCCAATAGTCCTGTGCATTGCTAATTCGACACCGACATTGCAAGATAAAACAATCGAGATTTTATCTCGATTATGTAAAGATCAGCCTGTTGTTTTAGGAGATAGTGTTGTTTCTGCCTCTGGATGTATATCTTCAATAGCTAAAAGGATAATTAGTTCCACTAATGTGAAGGTCAAAATTGGTGGTGTTGCGCTCCTTATTTGTGCTGCAAAAGCAAATCATCAGAGACTGGTGGAGGATCTCAATATATCAAACTTGTCTGTTAACCTTATTCAGTCTCTAGTTGATATTCTTATTTCTGCACAGTCTTCTTTGG 1717 0.4059 MKQFKPRLPFLVQERTIEALASLYGNPILSAKLANSDAKHLLVGLITMAANEVQDELIKALLTLCKSEGSLWRALQGRDGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTINHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLCVAPLSDILREGSAAGDAFDTVIMLLSSTKEETQAKSASALAEIFEARKDLRESSIAIKALCSAMKLLNVESESILMESSNCLASIFLSIKENKDVAAVARDTLSPLVALANSSILEVAEMAIGAVANLILDIDIAKKVAAEEVILPATRVLNEGTISGKTHAAAATARLLHSHKVDNAVTDCVDRAGTVLALVSFLDSSVNGSIDTSEALEALVILSRSEETGANIKPACAVLAEFPKSLIPIVLCIANSTPTLQDKTIEILSRLCKDQPVVLGDSVVSASGCISSIAKRIISSTNVKVKIGGVALLICAAKANHQRLVEDLNISNLSVNLIQSLVDILISAQSSL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9315g00001 572 Pfam Armadillo/beta-catenin-like repeat 110 149 IPR000225 GO:0005515
Trme9315g00001 572 Gene3D - 9 239 IPR011989 -
Trme9315g00001 572 SUPERFAMILY ARM repeat 246 565 IPR016024 -
Trme9315g00001 572 Gene3D - 240 572 IPR011989 -
Trme9315g00001 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 121 163 IPR000225 GO:0005515
Trme9315g00001 572 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 569 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Trme9315g00001 572 SMART arm_5 110 150 IPR000225 GO:0005515
Trme9315g00001 572 SMART arm_5 67 108 IPR000225 GO:0005515
Trme9315g00001 572 SMART arm_5 152 192 IPR000225 GO:0005515
Trme9315g00001 572 SMART arm_5 318 356 IPR000225 GO:0005515
Trme9315g00001 572 SUPERFAMILY ARM repeat 13 321 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9315g00001 Trme-Chr9315 8 1724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9315g00001 33 190 U-box Gene Family AT3G46510 30.303 3.72e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9315g00001 - - cam:101494820 980.704