Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme93080g00001 | ATCCAAGATGCTGATAAACAAATTGAGAAGCTGTCCGCGCTCCTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAGAAGAGAATGGAAAAAGATATTGATGAAGTTGGAAAGATTGCACATGGGGTCAAAGCGAAAATAGAAGCTATCAACAGAGAAGTAATGGGATGCTAG | 210 | 0.3905 | IQDADKQIEKLSALLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKAKIEAINREVMGC | 69 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme93080g00001 | 69 | Pfam | Syntaxin | 1 | 66 | IPR006011 | GO:0016020 | |
| Trme93080g00001 | 69 | Coils | Coil | 1 | 31 | - | - | |
| Trme93080g00001 | 69 | Gene3D | - | 1 | 67 | - | - | |
| Trme93080g00001 | 69 | SUPERFAMILY | t-snare proteins | 1 | 64 | IPR010989 | GO:0016020|GO:0016192 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme93080g00001 | 1 | 69 | SNARE and Associated Proteins | AT3G03800 | 53.333 | 1.12e-19 | 77.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme93080g00001 | K08486 | - | gmx:100800991 | 112.849 |