Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme93054g00001 CCTCAGGGGACTCTTAGTCAACATCTGTTTGACTGGAAAGATGACGGGTCAAAACCGCTTGACTGGAAGACCAGGCTCTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATACCTTCATGGTTTGGCTCAGCATATTTTTATCCACAGGGATCTGAAACCGTCAAACATCTTGCTTGGCGATGATATGCGCGCTAAAGTATCCGACTTTGGATTGGTTCGACTTGCTCCTGAAGGACAAGCCTCATTCGAGACTAGACTGGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAG 298 0.4765 PQGTLSQHLFDWKDDGSKPLDWKTRLSIALDVARGVEYLHGLAQHIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYA 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme93054g00001 99 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Trme93054g00001 99 FunFam Os07g0541700 protein 1 90 - -
Trme93054g00001 99 PANTHER OSJNBA0070M12.3 PROTEIN 1 99 - -
Trme93054g00001 99 SUPERFAMILY Protein kinase-like (PK-like) 2 98 IPR011009 -
Trme93054g00001 99 Gene3D Transferase(Phosphotransferase) domain 1 1 99 - -
Trme93054g00001 99 Pfam Protein kinase domain 20 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme93054g00001 99 ProSiteProfiles Protein kinase domain profile. 1 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme93054g00001 Trme-Chr93054 419 716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme93054g00001 3 99 Receptor kinase-like Gene Family AT1G11050 52.577 1.49e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme93054g00001 Pkinase 1.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme93054g00001 K00924 - gmx:100776064 182.956