Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92943g00001 ATGCCATGGAATGGTGACTTTGCACTTAAGACACTTTATTATGGTGAATTTGAGAATTCTGGACCTGGTTCTGATTTGTCTCAGAGAGTGTCTTGGAGTAGTAAAATCCCTGCTGAACATGTGGCGAGTTATTCAGTGGAGAATTTCATTCAAGGAGGTGAGTTTTCTTCATCTCAGTCATCATCACTCATCATCAGCTCATCGTTGTAG 210 0.4095 MPWNGDFALKTLYYGEFENSGPGSDLSQRVSWSSKIPAEHVASYSVENFIQGGEFSSSQSSSLIISSSL 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92943g00001 69 SUPERFAMILY Pectin lyase-like 2 56 IPR011050 -
Trme92943g00001 69 Pfam Pectinesterase 1 52 IPR000070 GO:0030599|GO:0042545
Trme92943g00001 69 Gene3D - 1 66 IPR012334 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92943g00001 1 57 Carbohydrate Esterase AT5G09760 73.684 1.21e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92943g00001 - - mtr:11442613 109.768