Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92841g00001 ATGGGCAATTGTTGCTCAGGTGGCACTGATGATCCACAAGACAAGGGAGAAACCAATCAACAAAACAATGCAAATGGAGATTCATCGGCTACAACGCCGCCGCCATCATCAAAACCAGCTTCTAAATCATCAAAACCGGCCGCGATGGGTCCTGTTCTCGGAAGACCAATGGAAGATGTAAAAGCTACATATAGCATGGGGAAGGAACTTGGAAGAGGACAATTTGGTGTAACACATTTATGCACACATAAAGCCACTGGAAAACAATATGCTTGCAAAACAATTGCCAAGAGAAAGCTTGTTAACAAGGAAGATATCGAGGATGTTAGGAGGGAGGTTCAGATTATGCATCATCTCACAGGACAGCCTAATATTGTGGAACTTCTTGGTGCTTATGAAGATAAACAATCTGTTCATTTGGTTATGGAGTTGTGTGCAGGTGGTGAACTATTCGATCGAATCATCGCTAAGGGTCATTATACCGAACGCGCTGCAGCTTCCTTGTTGAGAACCATTGTTCAAATT 525 0.4305 MGNCCSGGTDDPQDKGETNQQNNANGDSSATTPPPSSKPASKSSKPAAMGPVLGRPMEDVKATYSMGKELGRGQFGVTHLCTHKATGKQYACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELLGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQI 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92841g00001 175 MobiDBLite consensus disorder prediction 1 54 - -
Trme92841g00001 175 ProSitePatterns Protein kinases ATP-binding region signature. 70 97 IPR017441 GO:0005524
Trme92841g00001 175 FunFam Calcium-dependent protein kinase 1 66 149 - -
Trme92841g00001 175 SUPERFAMILY Protein kinase-like (PK-like) 63 173 IPR011009 -
Trme92841g00001 175 MobiDBLite consensus disorder prediction 12 43 - -
Trme92841g00001 175 SMART serkin_6 64 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme92841g00001 175 Gene3D Phosphorylase Kinase; domain 1 68 144 - -
Trme92841g00001 175 Pfam Protein kinase domain 64 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme92841g00001 175 Gene3D Transferase(Phosphotransferase) domain 1 103 174 - -
Trme92841g00001 175 ProSiteProfiles Protein kinase domain profile. 64 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme92841g00001 175 PANTHER SERINE/THREONINE-PROTEIN KINASE 58 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92841g00001 Trme-Chr92841 12 536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92841g00001 1 175 EF-hand Containing Proteins AT5G12180 73.404 1.15e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme92841g00001 Pkinase 6.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92841g00001 K13412 - gmx:100820422 285.804