Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92810g00001 CCTCAGGGGACTCTTAGTCAACATCTGTTTGACTGGAAAGATGACGGGTCAAAACCGCTTGACTGGAAGACCAGGCTCTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATACCTTCATGGTTTGGCTCAGCATATTTTTATCCACAGGGATCTGAAACCGTCAAACATCTTGCTTGGCGATGATATGCGCGCTAAAGTATCCGACTTTGGATTGGTTCGACTTGCTCCTGAAGGACAAGCCTCATTCGAGACTAGACTGGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAGGTTCCTAG 306 0.4771 PQGTLSQHLFDWKDDGSKPLDWKTRLSIALDVARGVEYLHGLAQHIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYAGS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92810g00001 101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Trme92810g00001 101 SUPERFAMILY Protein kinase-like (PK-like) 2 99 IPR011009 -
Trme92810g00001 101 PANTHER OSJNBA0070M12.3 PROTEIN 1 100 - -
Trme92810g00001 101 Pfam Protein kinase domain 20 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme92810g00001 101 Gene3D Transferase(Phosphotransferase) domain 1 1 101 - -
Trme92810g00001 101 FunFam Os07g0541700 protein 1 90 - -
Trme92810g00001 101 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92810g00001 Trme-Chr92810 2 383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92810g00001 3 99 Receptor kinase-like Gene Family AT1G11050 52.577 2.02e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme92810g00001 Pkinase 9.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92810g00001 K00924 - gmx:100776064 182.956