Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92733g00001 AATGAAACAGAGCAAGTTGTAGTTCATTGTGATATTAAGCCGAGCAACGTACTTCTTGACAATGACCTTGTAGCCCATTTGGGAGACTTTGGCTTAGCTAGGCTCATCCATGGAGCCACAGGACATTCAAGTAAAGACCAAATTAATTCCTCTGCAATTAAGGGAACTGTTGGATATGTTCCACCTGAGTATGGAGTAGGTGGTCAAGTATCACCTCAGGGAGATATCTACAGCTACGGTATTCTTTTATTAGAAATGCTCACTGGAAAGAAACCAACAGATAACATGTTTTTGGAGAGTCTAAATCTACATGAATTCTGTAAGATGAAAATTCCAGAAGAAATCCTTGAGTTAGTAAATTCACAATTGCTTTTGCCATTTGCTGAAGACCGGACAGGGATTGTGGAAAACAAGATTAGGATGTGTTTGGTGAAGTTTGCTAGAATTGGAGTTGCATGTTCTGAAGAGTTTCCTGCACATCGAATGCCGATAAAAGATGTTATAGTTAAGTTGAATGAAATCAAATCAAAGTTTTCATGCTAG 543 0.3849 NETEQVVVHCDIKPSNVLLDNDLVAHLGDFGLARLIHGATGHSSKDQINSSAIKGTVGYVPPEYGVGGQVSPQGDIYSYGILLLEMLTGKKPTDNMFLESLNLHEFCKMKIPEEILELVNSQLLLPFAEDRTGIVENKIRMCLVKFARIGVACSEEFPAHRMPIKDVIVKLNEIKSKFSC 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92733g00001 180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 7 19 IPR008271 GO:0004672|GO:0006468
Trme92733g00001 180 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 5 176 - -
Trme92733g00001 180 ProSiteProfiles Protein kinase domain profile. 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme92733g00001 180 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 180 - -
Trme92733g00001 180 SUPERFAMILY Protein kinase-like (PK-like) 6 168 IPR011009 -
Trme92733g00001 180 Pfam Protein kinase domain 5 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme92733g00001 180 Gene3D Transferase(Phosphotransferase) domain 1 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92733g00001 Trme-Chr92733 43 719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92733g00001 7 178 Receptor kinase-like Gene Family AT3G47580 43.605 1.40e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme92733g00001 Pkinase 7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92733g00001 - - mtr:11438431 288.885