Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92683g00001 ATGGAAATAGTAAAAGTTGATAACAACGGTGAGAATTTCATGGGAGTGAGTCCGTCGAGGTGGCCAAAAGTGGAAGTTCAAGCACTGATAAATCTGAGAACAAGCATGGATAATAAGTACCAAGAGAATGTACCAAAAGGCCCTCTATGGGAGGAAATCTCTTCAGCAATGAAGAACCTTGGTTACAATAGGAATGCAAAAAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAAAGTGAAGGAAAGTAACAAGAAGAGACCAGAAGATTCAAAGACATGTCCTTATTTTCATCAGTTGGATGCTTTGTATAAGGAGAAAGGCAAAGGGGACAATTCTGGTGGCAGCGGTGGTTCAAGCCAAGTGGTGAAGGCGGATAACATGACGGCGCCGTTAATGGTTAGGCCTGAGCAACAATGGCCACCTCAGCAGGAAGAAGATCGAATGAATCGGAACCGTGGAGAAGAAGAAGATGATATGGATGAAGATGATAAAGAAGGAGAGGACGAAAACGAAGAAGATATGGATGAAAGTGGTGGTGGTGGCGGTGGTAGTAACTTTGAG 573 0.4293 MEIVKVDNNGENFMGVSPSRWPKVEVQALINLRTSMDNKYQENVPKGPLWEEISSAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKGKGDNSGGSGGSSQVVKADNMTAPLMVRPEQQWPPQQEEDRMNRNRGEEEDDMDEDDKEGEDENEEDMDESGGGGGGSNFE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92683g00001 191 Gene3D - 21 82 - -
Trme92683g00001 191 MobiDBLite consensus disorder prediction 144 158 - -
Trme92683g00001 191 Pfam Myb/SANT-like DNA-binding domain 19 106 IPR044822 -
Trme92683g00001 191 PANTHER FI21293P1 13 162 - -
Trme92683g00001 191 ProSiteProfiles Myb-like domain profile. 19 77 IPR001005 -
Trme92683g00001 191 MobiDBLite consensus disorder prediction 109 191 - -
Trme92683g00001 191 CDD GT1 19 84 - -
Trme92683g00001 191 SMART sant 17 79 IPR001005 -
Trme92683g00001 191 MobiDBLite consensus disorder prediction 159 180 - -
Trme92683g00001 191 FunFam Trihelix transcription factor GT-2 21 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92683g00001 Trme-Chr92683 27 599 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92683g00001 1 143 Trihelix Transcription Factor Family AT1G76880 66.000 2.00e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trme92683g00001 Myb_DNA-bind_4 3.9e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92683g00001 - - vvo:131628407 252.292