Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92647g00001 ATGCTTGCATTCATTTTGCAGACTGGTAACGATGAACTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCAGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGCGAATACCCATTTCTCGGAGACACACTTCAAGATACATACGACAGAATAGTCAATAATCCTATAGAAATCCCAGATGACGTAAACCCGCAGTTAAAGAATTTAATAGAAGGATTGCTTTGCAAAG 283 0.4028 MLAFILQTGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDRIVNNPIEIPDDVNPQLKNLIEGLLCK 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92647g00001 94 SUPERFAMILY Protein kinase-like (PK-like) 4 93 IPR011009 -
Trme92647g00001 94 Gene3D Transferase(Phosphotransferase) domain 1 2 94 - -
Trme92647g00001 94 ProSiteProfiles Protein kinase domain profile. 1 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme92647g00001 94 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 9 94 - -
Trme92647g00001 94 Pfam Protein kinase domain 13 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92647g00001 Trme-Chr92647 52 537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92647g00001 11 92 AGC Kinase Gene Family AT1G48490 40.000 3.00e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Trme92647g00001 Pkinase 3.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92647g00001 K00908 K07359 gmx:100807940 179.489