Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92625g00001 ATGGGTGCTCCTAAGCAGAAATGGTCAGCAGAAGAGGAAGCAGCGCTTAAGGCTGGAGTTGTCAAGCATGGGGTGGGTAAATGGCGCACAATACTCAAGGATCCTGAGTTTAATTGTGTCTTATATATTCGCTCAAATGTTGATCTAAAGGATAAATGGAGAAATTTGAGTGTGATGGCAAATGGATGGACTTCTAGGGAGAAGGCTAAGGTATCAATCAGAAGGGCACATCATCAGGGATCAAGACATGATGACAACCCTATGGCTGTCACTCCTGTTACTCCAAGTGATGATGAA 297 0.4411 MGAPKQKWSAEEEAALKAGVVKHGVGKWRTILKDPEFNCVLYIRSNVDLKDKWRNLSVMANGWTSREKAKVSIRRAHHQGSRHDDNPMAVTPVTPSDDE 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92625g00001 99 FunFam Telomere repeat-binding factor 1 2 58 - -
Trme92625g00001 99 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Trme92625g00001 99 Gene3D - 8 85 - -
Trme92625g00001 99 MobiDBLite consensus disorder prediction 72 99 - -
Trme92625g00001 99 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Trme92625g00001 99 PANTHER SINGLE MYB HISTONE 4 1 92 IPR044597 GO:0003691
Trme92625g00001 99 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Trme92625g00001 99 CDD SANT_TRF 6 56 - -
Trme92625g00001 99 FunFam Telomere repeat-binding factor 1 8 86 - -
Trme92625g00001 99 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Trme92625g00001 99 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92625g00001 Trme-Chr92625 297 719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92625g00001 1 99 Single Myb Histone (SMH) Gene Family AT1G49950 64.646 6.07e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme92625g00001 Myb_DNA-binding 6.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92625g00001 K09422 - gmx:100780698 167.933