Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9243g00001 ATGACCTTTGCCTCAATAACAGTAACCACTGATAGTTTTGTGCTTCTTGATAACTTCACTTTTGCAAACTATACTAGCTCTCACTTGATGAAGGAGTATTTAATCAGTGTTACATCTTATGAGTTGTTTATCACATTCATCCCTCGCCTCAATTCACTTGTTTTTGTTAATGCCATTGAAGTTGTCTCTATGCCAGATGTGCTATTTCCTAACAGTCTAAATCCATCCACCCCTTTCACAGAATTCACCCTTGAAACAGTGTATCGATTGAATGTGGGAGGTGCAAATATCAGTGCTCAAAATGACACACTCAGTAGGAATTGGGAGAGCGATGAAACTTACTTTCAGTCCACCACCACTGGTATGAATATTGCAACAAACATTTCTGCTATTAAGCATCCTGATTTCTTAGAATTCACAGCACCACCAATGGTTTATGTTACTGCTAAATCCCTGGGAAGTGTCTCAGAGGATTACAAATTAAGCTGGGAATTCCGTGTAAGCCCAAATTTTTTTTACTTTGTTCGTGTGCATTTCTGTGACATGATTAGCAACTCTACTAACTCTATGGTTTTGGATCTATTTATGAATGGATACATTGCTTTTCGAAGTCTTGACTTGTTAAGAGTTTCTGGTGACCTTGCTGAGCCGTATTACAAAGACTTTGTGTTTGAAGTCACAGAGAAAACACTCACAGTAAGTGTTGGTCCTGCTACAATGTCTAGTATACGAAATGCAACGATGAATGGGATAGAGATAATGAAGTTCATTAACAAAGTTGATGCATCAAAAAAAGAAAACAGAGTTAACAATGTTCTAACAAAAACTTCAGAACTAAGCAAGACATCAAAATTGGTCATTATAATTGGATGTGGTGTCTCTGTTGTAATATTTCTAGCATTTCTTGGACTATCATTTTGTTACCAAAAATCCTGCAGGTTGAAGAAAAATTCAGCAAATGCTTACGAATTTCTGAGGCATTTTACTTTACATGAGATCCAACACGCAACAAATGGTTTTGATGCTGAGCTGCTTATTGGAGTAGGAGGATTTGGAAAGGTGTATAAAGGAAAACTAGAAAATGGGAAAGTAGTAGCCATCAAAGTAGCAAATCCTGAATCTAGACAAGGTCTCAGTGAATTCCATAATGAGATTGAGTTGTTGTCTGGTCTTCGTCATCAAAACCTTGTCTCTCTTGTAGGTTGTTGTAATGAAGACTCAGAA 1224 0.3709 MTFASITVTTDSFVLLDNFTFANYTSSHLMKEYLISVTSYELFITFIPRLNSLVFVNAIEVVSMPDVLFPNSLNPSTPFTEFTLETVYRLNVGGANISAQNDTLSRNWESDETYFQSTTTGMNIATNISAIKHPDFLEFTAPPMVYVTAKSLGSVSEDYKLSWEFRVSPNFFYFVRVHFCDMISNSTNSMVLDLFMNGYIAFRSLDLLRVSGDLAEPYYKDFVFEVTEKTLTVSVGPATMSSIRNATMNGIEIMKFINKVDASKKENRVNNVLTKTSELSKTSKLVIIIGCGVSVVIFLAFLGLSFCYQKSCRLKKNSANAYEFLRHFTLHEIQHATNGFDAELLIGVGGFGKVYKGKLENGKVVAIKVANPESRQGLSEFHNEIELLSGLRHQNLVSLVGCCNEDSE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9243g00001 408 FunFam receptor-like protein kinase FERONIA 306 408 - -
Trme9243g00001 408 SUPERFAMILY Protein kinase-like (PK-like) 322 407 IPR011009 -
Trme9243g00001 408 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Trme9243g00001 408 ProSiteProfiles Protein kinase domain profile. 340 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme9243g00001 408 PANTHER OS03G0124300 PROTEIN-RELATED 4 313 IPR046957 GO:0004672
Trme9243g00001 408 FunFam Receptor-like protein kinase FERONIA 83 258 - -
Trme9243g00001 408 Pfam Protein tyrosine and serine/threonine kinase 345 406 IPR001245 GO:0004672|GO:0006468
Trme9243g00001 408 Gene3D Phosphorylase Kinase; domain 1 310 408 - -
Trme9243g00001 408 Gene3D - 82 257 - -
Trme9243g00001 408 Pfam Malectin-like domain 23 255 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9243g00001 Trme-Chr9243 547 1770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9243g00001 4 408 Receptor kinase-like Gene Family AT2G21480 36.344 1.91e-86 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme9243g00001 Malectin_like 2.2e-26 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9243g00001 - - tpra:123882962 573.548