Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92348g00001 ATCTTAACAAAGTTTGGTGAAATTGCAGATCTAGGAGCAGAGTCAGAAGATGAAACATGGAGTGTGGCAACATTGTATTGCAATGAAGCCAAGCCGGAGGATTGCGATTTCATATACATTTCAGAAGTACTGCGTGCTTCTAATTACTTGCCCGAAGACAATGACATGTTCTTGTTACTAGAACAACAACAATACCTCAAAGGCAACGACACTTCCAAAGTTTCCACTCTTCAAAGACGGTTAATCTTCGACACAATTCATGAGATCCTCAACCGTAAACGACGTTTGCCACCGTGGAAGTTGGAGAACGCGCCGTCGTTAAAATTTATATGGTCCGAATTTCGGAGAATCCGAGAAAGGGACGAGTCGGAGGACATGTTTGAGGTTATATGTGGAGTGTTGAGAAAGGACATGAGTGGAGAGAATGATTGGGGTGAATGCGACGTGGAGATTGGAGATGTCGTGTTGGACATCGAACGGTTCATATTCAAAGATCTTATCGAAGAAACCATTAGAGATTTAGCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANATGCTCCGTAGGAAGTTAGAGTTTTAA 585 0.4 ILTKFGEIADLGAESEDETWSVATLYCNEAKPEDCDFIYISEVLRASNYLPEDNDMFLLLEQQQYLKGNDTSKVSTLQRRLIFDTIHEILNRKRRLPPWKLENAPSLKFIWSEFRRIRERDESEDMFEVICGVLRKDMSGENDWGECDVEIGDVVLDIERFIFKDLIEETIRDLAXXXXXXXXXXXMLRRKLEF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92348g00001 194 Coils Coil 164 175 - -
Trme92348g00001 194 Pfam Domain of unknown function (DUF4378) 36 169 IPR025486 -
Trme92348g00001 194 Coils Coil 187 191 - -
Trme92348g00001 194 PANTHER LONGIFOLIA PROTEIN 33 181 IPR033334 GO:0051513
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92348g00001 Trme-Chr92348 2 586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92348g00001 10 175 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 45.614 5.00e-44 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92348g00001 - - vvo:131610134 273.478