Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92312g00001 ATGACAGAGAGTGTAGAGAGAGAAGTTGTGGGAAGGAGTGGGAACAGGAGTTTTGCACCGGGGAAAAGGCGTGACTTCATCCACAACCTAGATAAGGTCACCACCTCTTTCTTCATCACCAATTTCCCGAACGAAGCTACGTCTGAAGATCTGTGGGAGCTTTTTCTACAATATGGAAAGGTTGGAGAGGTTTACATCCCAAAGAAGCTTGATAAAAGGGGGCGTAGGTTTGGTTTTGTGAAGTTTAAGGAGGTGAAGGAAGTGGAGATGCTCAGTGAAAGCTTGAGGGATGTATGGCTTGGATCGTTCAAACTCCGAGTCAATCTTTCGCGATTCGGTCGATCAGAAAGTAAAGTTGCTTCATCTCAAAAAGACCCTATTCAACGATTAGCAGCAATGATGGAAGAATCGCAACCGGGAAGATCGTTCAGGAATGCACTGTTGGGAGCCGTAGTAGGTTCGGAGAAGCCGCTTCTGTTGAAGGTCCCGGTGAATGAACCTTTGTGTAAGGAGTTGAGAGGAAGTATGGTTGGAATTTTAGCGC 544 0.4632 MTESVEREVVGRSGNRSFAPGKRRDFIHNLDKVTTSFFITNFPNEATSEDLWELFLQYGKVGEVYIPKKLDKRGRRFGFVKFKEVKEVEMLSESLRDVWLGSFKLRVNLSRFGRSESKVASSQKDPIQRLAAMMEESQPGRSFRNALLGAVVGSEKPLLLKVPVNEPLCKELRGSMVGILA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92312g00001 181 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 34 122 - -
Trme92312g00001 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 102 IPR000504 GO:0003723
Trme92312g00001 181 Gene3D - 33 114 IPR012677 -
Trme92312g00001 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 112 IPR000504 GO:0003723
Trme92312g00001 181 SMART rrm1_1 36 108 IPR000504 GO:0003723
Trme92312g00001 181 CDD RRM_SF 38 108 - -
Trme92312g00001 181 SUPERFAMILY RNA-binding domain, RBD 30 115 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92312g00001 Trme-Chr92312 20 563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92312g00001 34 107 Eukaryotic Initiation Factors Gene Family AT3G16380 36.486 3.59e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92312g00001 - K12891 pvu:PHAVU_010G036700g 88.1965