Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92311g00001 AATCCAAGTGCTGAAAATCTGTATGGTCATACAGCAGAAGAAGTTCTTGGTCATGATGGGATTGAGGTGCTTGTAGACCCTAGTGAATTTGACTTAGCTAGTGATATATTCAACCGTGTGAAAATGGGAGAAAGTTGGACTGGTCAATTTCCTGTTAAGAATAAGATGGGGGATAAGTTTGTAGTTGTTGCAACCAATACACCTTTCTATGATGATGATGGAAGCTTGATTGGTGTTATTTGTGTCTCAAGTGATTCGAGACCTTTCCTTGAAAACATTGTTCCTTTTTCAGTTGGAAAGAAGGAAGAAAAGGATTCAGGTGTTAATTTTCCTAGAATTGCCATTACAAATAAGCTCGGTCTTGATCCTCAGCAGCCACTTCAAAATGCTCTAGCGTCGAAAATCTCGAATTTGGTTTGCTTCAAAGGTGAGTAA 435 0.3885 NPSAENLYGHTAEEVLGHDGIEVLVDPSEFDLASDIFNRVKMGESWTGQFPVKNKMGDKFVVVATNTPFYDDDGSLIGVICVSSDSRPFLENIVPFSVGKKEEKDSGVNFPRIAITNKLGLDPQQPLQNALASKISNLVCFKGE 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92311g00001 144 CDD PAS 1 85 IPR000014 -
Trme92311g00001 144 Gene3D PAS domain 1 88 - -
Trme92311g00001 144 ProSiteProfiles PAS repeat profile. 1 44 IPR000014 -
Trme92311g00001 144 Pfam PAS domain 1 85 IPR000014 -
Trme92311g00001 144 NCBIfam PAS domain S-box protein 1 85 IPR000014 -
Trme92311g00001 144 SUPERFAMILY PYP-like sensor domain (PAS domain) 1 85 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92311g00001 Trme-Chr92311 157 673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92311g00001 4 139 MAP Kinase Kinase Kinase AT1G67890 50.676 1.46e-40 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92311g00001 - - lja:Lj4g3v2265060.1 211.846