Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92273g00001 ATGGCAGTCGTGTTAGTAATCTTAGTCGCTGTGTTTTTCATCCTCGGTTTTCTCTCCGTCTACACTCGTCAGTGTGCAGAACAGAGAATTAGAGGAAGATTCGATTTATCAATTCCGATCGTCGGAAGTAACCGGAGACACCGTGGACTTGACTCCGAAATCATCGAAACGTTTCCGACGTTTGTTTACAACACCGTGAAAGGTCATAAAATTGGAAGAGCCGCGCTAGAATGCGCCGTTTGTTTAAACGAATTTCAAGACGATGAAACGCTGCGTTTGATTCCTAATTGTTGCCACGTGTTTCATCCTGAATGTATTGATGCTTGGCTTGTTAATCACTCCACGTGTCCCGTTTGTCGGGCCAATTTAATTCCAAAACCCGGATCCAATTTCGTTTCAATTCAGATTCCGGATTTGTATACATCCGATTCAGATGGCCCGACCCGAAATGATTTGGTTTCCSAAACCACGGCTAATAGAGATACCGTTATTATTACATCTCGTTCTCCTTCTCCTCCTAAGGTGAATTATTCAGTTACACCGAACCGGGCTCGACCGGTTCGATCAAGTTCAACCGGGTTTAAAATTGGGAACTGGTTACCATTTCCACGGTCACATTCGACGGGTCATTCACTGGTTCAAGAAGGGGAGAGTCATGAGCGGTTCACGTTGAGATTA 678 0.4469 MAVVLVILVAVFFILGFLSVYTRQCAEQRIRGRFDLSIPIVGSNRRHRGLDSEIIETFPTFVYNTVKGHKIGRAALECAVCLNEFQDDETLRLIPNCCHVFHPECIDAWLVNHSTCPVCRANLIPKPGSNFVSIQIPDLYTSDSDGPTRNDLVSZTTANRDTVIITSRSPSPPKVNYSVTPNRARPVRSSSTGFKIGNWLPFPRSHSTGHSLVQEGESHERFTLRL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92273g00001 226 PANTHER RING FINGER DOMAIN-CONTAINING 3 130 - -
Trme92273g00001 226 SMART ring_2 78 119 IPR001841 -
Trme92273g00001 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 125 IPR013083 -
Trme92273g00001 226 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
Trme92273g00001 226 SUPERFAMILY RING/U-box 77 127 - -
Trme92273g00001 226 Pfam Ring finger domain 77 120 IPR001841 -
Trme92273g00001 226 CDD RING-H2_EL5-like 77 120 - -
Trme92273g00001 226 MobiDBLite consensus disorder prediction 207 226 - -
Trme92273g00001 226 FunFam E3 ubiquitin-protein ligase ATL6 40 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92273g00001 Trme-Chr92273 1 678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92273g00001 1 226 Rapid Response to Elicitors AT3G05200 43.162 1.15e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92273g00001 K10664 - jre:108987460 259.996