Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92272g00001 ATGTTAGATCCTGTAACCATTTCCACTGGCCAAACATATAACAGAGCTTCAATTAAGAAATGGTTTGAAGCCGGAAACATGACATGTCCGAAAACCGGGGAGAGACTCATTTCCACAGAGTTTTTTCCCAACACAGCACTGAAAAATCTTATCCAACAATTCTGTTATGATAACGGCATTTCAATTTTAACTACCAAATCTCATAGCGTAACTGCCACCACTGTTAGTCCTGGTAGTTCGGCTGCAGCTCACGGGATACAGTTCGCGTCATGGTCACTTGCTCGGAGATTAGTTTTTGGAACTGATGAACAGAAAAACAAAGCAGCTTATGAGATTCGTTTACTCGCGAAATCAAATGTTTTTAATACGGCATGTTTGGTTGAAAATGGAACTGTACCACCTTTGCTTGATCTTGTTTTAACTTCAACGATGCAAGAGAATGCAATTTCTGCTCTTTTGAAGCTTTCAAAGCATAGTAATGGCCGCGAAGTTATCATGGAGAGTCGAGGATTAAAAACAATTGTTAACGTTCTCAATAGAGGGTACAGTTTAGAAGCTCGTCGTGTTGCAGCTG 574 0.4042 MLDPVTISTGQTYNRASIKKWFEAGNMTCPKTGERLISTEFFPNTALKNLIQQFCYDNGISILTTKSHSVTATTVSPGSSAAAHGIQFASWSLARRLVFGTDEQKNKAAYEIRLLAKSNVFNTACLVENGTVPPLLDLVLTSTMQENAISALLKLSKHSNGREVIMESRGLKTIVNVLNRGYSLEARRVAA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92272g00001 191 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Trme92272g00001 191 SUPERFAMILY ARM repeat 102 188 IPR016024 -
Trme92272g00001 191 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Trme92272g00001 191 Pfam U-box domain 1 58 IPR003613 GO:0004842|GO:0016567
Trme92272g00001 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 62 IPR013083 -
Trme92272g00001 191 PANTHER U BOX DOMAIN-CONTAINING 1 191 - -
Trme92272g00001 191 SUPERFAMILY RING/U-box 1 61 - -
Trme92272g00001 191 CDD RING-Ubox_PUB 1 41 IPR045210 -
Trme92272g00001 191 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 130 170 IPR000225 GO:0005515
Trme92272g00001 191 Gene3D - 81 191 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92272g00001 Trme-Chr92272 62 635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92272g00001 1 191 U-box Gene Family AT1G10560 40.415 2.69e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92272g00001 - - aip:107640973 256.144