Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92253g00001 ATGGGAAAACCAGCTGGAAAAAAGAAGGAACATCATGAATCACCAAAAACAAAGAACAACAACAACAAAGGTGGTGGTGGTGGTTACGAACGTTCATCATCATCAAAAGCATTAGACGATGATACAGCGATGTTTATCAACATGTCACAAGAGTTAAGAGAAGAAGGTAACAAACTTTTTTACCAGAAAAAAGACAATGAAGGTGCTATGTTAAAGTACGAAAAAGCCCTTAAACTTCTTCCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANAATATGGCTATGTGTTATATGCAATTGGGTCTTGGTGAGTACCCTAGAGCAATCAATGAGTGCAATCTTGCTTTGCAGGTTTCGCCGAGGTATAGTAAAGCTCTTTTGAAAAGAGCTAAGTGTTATGAATCGTTGAATCGGTTAGATTTGGCTATGAGAGATGTTAGGGTTGTTTTGAATGCTGAACCGAATAATTTGACCGCGTTGGAGATTCTTGATAGTTTGAGGAATACTATGGATGAGAAAGGGATTACAATCGATGAGACTGAGATTGCTTTGGCTGCTTTGCAGCAGGTGGAGCCACCTGCTGCAAGGTTTAGGAAAGTTGTTAGGGAGAAGATTACTAATAAGAAGAAAGGACATAAAGGGGAAGGCGAGGAGGAGCGGAAAAGTAAGAATGTTGTTGATGAGAAGAAAAACAATGTTG 703 0.3755 MGKPAGKKKEHHESPKTKNNNNKGGGGGYERSSSSKALDDDTAMFINMSQELREEGNKLFYQKKDNEGAMLKYEKALKLLPXXXXXXXXXXXNMAMCYMQLGLGEYPRAINECNLALQVSPRYSKALLKRAKCYESLNRLDLAMRDVRVVLNAEPNNLTALEILDSLRNTMDEKGITIDETEIALAALQQVEPPAARFRKVVREKITNKKKGHKGEGEEERKSKNVVDEKKNNV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92253g00001 234 PANTHER PROTEIN CLMP1 1 224 IPR044517 -
Trme92253g00001 234 MobiDBLite consensus disorder prediction 202 234 - -
Trme92253g00001 234 MobiDBLite consensus disorder prediction 1 18 - -
Trme92253g00001 234 SUPERFAMILY TPR-like 47 167 IPR011990 GO:0005515
Trme92253g00001 234 Gene3D Tetratricopeptide repeat domain 38 176 IPR011990 GO:0005515
Trme92253g00001 234 MobiDBLite consensus disorder prediction 209 234 - -
Trme92253g00001 234 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92253g00001 Trme-Chr92253 19 721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92253g00001 37 157 Calmodulin-binding Proteins AT3G25230 31.061 3.59e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92253g00001 K26538 - aip:107605387 275.789