Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme92138g00001 ATGCTTTCTTTGTTTAATAACAACTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATACAAACAATTTCTCTCATAGCACATCTTTTTGAATACAAAGGTGTGACAGGGCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCGAACTGGATTATTGAATTCTCAACGTGGGCTCCTAGCATTAAAACTATTCTTTACGATGGGCGGATGGATGAGAGAAAAGCCATAAAGGAAGAATATTCAGGAGAGGGGAAATTTAATGTTATGATTACACATTATGATCTTATAATGAGAGACAAAGCGTTTCTGAAGAAAATTAAATGGAACTACTTAATTGTGGATGAAGGTCATCGGTTGAAGAATCATGAGTCTGTTCTAGCAAAAACATTGGACAATAG 410 0.3707 MLSLFNNNLNGILADEMGLGKTIQTISLIAHLFEYKGVTGPHLIVAPKAVLPNWIIEFSTWAPSIKTILYDGRMDERKAIKEEYSGEGKFNVMITHYDLIMRDKAFLKKIKWNYLIVDEGHRLKNHESVLAKTLDN 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme92138g00001 136 Pfam SNF2-related domain 8 134 IPR000330 GO:0005524|GO:0140658
Trme92138g00001 136 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 135 IPR027417 -
Trme92138g00001 136 PANTHER SNF2/RAD54 HELICASE FAMILY 1 135 - -
Trme92138g00001 136 Gene3D - 1 136 IPR038718 -
Trme92138g00001 136 SMART ultradead3 1 136 IPR014001 -
Trme92138g00001 136 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 2 136 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme92138g00001 Trme-Chr92138 27 576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme92138g00001 11 134 RAD5 or RAD16-like Gene Family AT1G02670 31.757 9.07e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme92138g00001 SNF2_N 1.7e-31 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme92138g00001 - - gmx:100786280 251.906