Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme91970g00001 GTAACTGAGCAACCATCTATCCTTCAAGGTGGAGAATTAAGACCCTACCAAATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTCAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCATTGATAGCATATCTTTTGGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTAGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAATGAGTTCTCAACATGGGCTCCTAGCATTACAGCTGTTCTATACGACGGACGAATGGATGAGAGGAAAGCAATAAAGGAAGAACTGTCAGGGGAGGGGAAATTTAATGGCATCGATTGA 354 0.4181 VTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLEYKGVTGPFLIVAPKAVLPNWVNEFSTWAPSITAVLYDGRMDERKAIKEELSGEGKFNGID 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme91970g00001 117 Gene3D - 1 115 IPR038718 -
Trme91970g00001 117 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 117 IPR014001 -
Trme91970g00001 117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 107 IPR027417 -
Trme91970g00001 117 Pfam SNF2-related domain 16 100 IPR000330 GO:0005524|GO:0140658
Trme91970g00001 117 PANTHER SNF2/RAD54 HELICASE FAMILY 1 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme91970g00001 Trme-Chr91970 128 688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme91970g00001 3 105 RAD5 or RAD16-like Gene Family AT1G05120 38.532 7.29e-11 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme91970g00001 SNF2_N 1.5e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme91970g00001 - - gmx:100796912 219.55