Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9190g00001 GCAGAACTTGGTTCTCACCCAAATCCAAACTTGACTAATTGTAAGCTTTTTGTCGGAAATGTACCTTGGACAACTCGAAGTGAAACTGTTCAGTGGCACTTCAAGAGGTTTGGGGAAATCATCGAGACAGTCATTATCCTGGATAGGGACAGCGGACTTTCCAAAGGCTGTGCCTTTGTGAATTTTTGTGATCCAGAATCTGCTAATAGAGCTGTTAACTATAAAGGTCGCATTGTTATTGATGGCAGAGAGGCTAATTGGAGTTTGGCTCGTCCAAAACCTCCACCTGCTCCTCATATCTCCTATGACCGGGAAACACCGGTATATTCTTACTTGAGAGATTCGCTTACGGCCGGTGGTGCTTACGTAGGTTATGCAACCTACCAGCAACCACCTTATTATGGCGGAATGATTTGTCCTTCTTATGGGTATACATATATTGGTTATATGGCAGTACCAGCTGTCATCAGCCCATGGTTGATGCAATAG 489 0.4417 AELGSHPNPNLTNCKLFVGNVPWTTRSETVQWHFKRFGEIIETVIILDRDSGLSKGCAFVNFCDPESANRAVNYKGRIVIDGREANWSLARPKPPPAPHISYDRETPVYSYLRDSLTAGGAYVGYATYQQPPYYGGMICPSYGYTYIGYMAVPAVISPWLMQ 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9190g00001 162 Gene3D - 3 98 IPR012677 -
Trme9190g00001 162 SMART rrm1_1 15 88 IPR000504 GO:0003723
Trme9190g00001 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Trme9190g00001 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 84 IPR000504 GO:0003723
Trme9190g00001 162 PANTHER GEO13361P1-RELATED 9 129 - -
Trme9190g00001 162 SUPERFAMILY RNA-binding domain, RBD 6 114 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9190g00001 Trme-Chr9190 227 1054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9190g00001 16 72 C2H2 Transcription Factor Family AT2G19380 35.088 4.55e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9190g00001 - - vvi:100258188 114.775