Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme91891g00001 CAATGGAAAGGATGGAATTGGAGGTCAGAGGGAGATTTATATCTCAATGGTGCATACTTCACAGCATCAGGTGCTGGAGCTTCAGCTAGCTATGCAAGAGCCTCAAGTTTAGGAGCAAAATCTTCAGCTATGGTCGGAACCATTACATCAAATGCTGGCGCACTAGGTTGCAAAAGAGGTCGTCAGTGCTAA 192 0.4583 QWKGWNWRSEGDLYLNGAYFTASGAGASASYARASSLGAKSSAMVGTITSNAGALGCKRGRQC 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme91891g00001 63 PRINTS Pollen allergen Amb family signature 5 29 IPR018082 -
Trme91891g00001 63 PRINTS Pollen allergen Amb family signature 34 57 IPR018082 -
Trme91891g00001 63 PANTHER PECTATE LYASE 18-RELATED 1 61 IPR045032 GO:0030570
Trme91891g00001 63 Gene3D - 1 56 IPR012334 -
Trme91891g00001 63 SUPERFAMILY Pectin lyase-like 2 63 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme91891g00001 Trme-Chr91891 1 192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme91891g00001 1 63 Polysaccharide Lyase AT4G13710 76.190 1.18e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme91891g00001 K01728 - cave:132177837 112.079