Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme91846g00001 ATGTTTTCAAACAATGTCAAAAAGAAGTTGCCAGAAAATGTGGTCCTAAAAGGTCCTGGTGGAGTTGTGTGGGATATAGAGCTGACAACTAGAGACGGTATTGTGTATTTCACGAACGGTTGGCAACAATTTGTGAAAGATCATTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGCGAGTCATTGTTTGAGGTTTTAATCTTTGACGGGGAGAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTCGAAAATGTGGGCGTGCTGCTGCTAATACCGAACAAGGGGTTGGATGTTCTAGCAAGAAAAAGGACACAGATAATTCTGTTGAAGAAGTCAATACTCCTTCGAATGGTGTTGATGAAGGTGTTTCACCTGAAAAATCTTTACATCTAAACAGTATCCGAGTGCCATTTGCTGTACCTGTTGAAACTACCAACGGAAAGACTTCTAATGGTGGTGTTGAATCTGCCTCCCC 485 0.4062 MFSNNVKKKLPENVVLKGPGGVVWDIELTTRDGIVYFTNGWQQFVKDHSLKENDFLVFKYNGESLFEVLIFDGESFCEKAASYFVRKCGRAAANTEQGVGCSSKKKDTDNSVEEVNTPSNGVDEGVSPEKSLHLNSIRVPFAVPVETTNGKTSNGGVESASP 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme91846g00001 162 MobiDBLite consensus disorder prediction 93 129 - -
Trme91846g00001 162 Gene3D - 1 77 IPR015300 -
Trme91846g00001 162 Pfam B3 DNA binding domain 7 72 IPR003340 GO:0003677
Trme91846g00001 162 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Trme91846g00001 162 SMART B3_2 5 74 IPR003340 GO:0003677
Trme91846g00001 162 ProSiteProfiles B3 DNA-binding domain profile. 1 74 IPR003340 GO:0003677
Trme91846g00001 162 PANTHER B3 DOMAIN-CONTAINING 5 109 - -
Trme91846g00001 162 CDD B3_DNA 3 72 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme91846g00001 Trme-Chr91846 1 485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme91846g00001 2 91 REM Transcription Factor Family AT4G33280 56.044 2.00e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme91846g00001 B3 6.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme91846g00001 - - tpra:123885991 315.464