Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme917779g00001 ATGGTTGGTGAGCATGGAACTCAGCTCTCCGGAGGTCAAAAGCAAAGAGTTGCAATTGCAAGGGCAATTCTGAAAGATCCAAGAATCCTACTTCTTGATGAAGCTACAAGTGCGCTTGATGCGGAATCTGAAAGAGTAGTACAAGAGGCATTGGACAGAATAATG 165 0.4424 MVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRIM 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme917779g00001 55 Pfam ABC transporter 2 37 IPR003439 GO:0005524
Trme917779g00001 55 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 54 IPR027417 -
Trme917779g00001 55 PANTHER ABC TRANSPORTER B FAMILY 1 55 IPR039421 -
Trme917779g00001 55 Gene3D - 1 54 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme917779g00001 Trme-Chr917779 30 194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme917779g00001 2 55 Calmodulin-binding Proteins AT2G36910 81.481 2.17e-24 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme917779g00001 K05658 - cave:132171354 105.916