Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9175g00001 ATGCTAGCGGCAGCTGTTGGCATGAGGACTCACTGGGGAAAGTTAGTGGAATATTTGAATGACAGAGGAGTGGAGGAAACACCATTGCAAGTGAAATTGAATGGAGTTGCCACTGTTGTTGGTAAGATTGGCTTGAGTTTTGCTCTTCTGACATTTATTGTTTTGATCATACGATTTCTTGTGGAAATTGCAATTCACGGCAAGTTTTATAATTGGTCCTCAAAAGACACTATGAAGCTGCTGAACTACTTTACTATAGTTGTAACAATGATAGTCATTGCTGTTCCTGAAGGTTTACCATTGGCTGTGACACTCAACCTTGCTTTTGCAATGAAAAGTTTAACGAGTGATAAAGCACTAGTGAGGCATCTTTCTGCATGTGAAGCAATGGGTTCTGCTAGTTATATTTGTTTAGATAAGACAGGGACGGTGACCTCTAATCACATGGTGGTCGATAAATTATGGATTTCTGGCGAAGTTGTGGAGATGGAAGGTACTGAGAATGGTGACAAACTGAAACGAAAGATATCTGAAGAAGTTCTTAACTTACTTTTGCAGGCTTTATTCCAAAATAATGCTTCAGAAATGGTTAAGGATATACAAGGAAAGATCACAGTATTGGGGACTCCAACAGATTCAGCATTGTTGGAATTTGGCTTGCTTTTGGGGGGTGATTTTGATGTCCAATGTAGATTGTATAAGAAACTTAAGACTGAGCCTTTTAATCCTGTCCAGAAGAAGATGAGTGTCCTTGTTAGTCTTCCAAATGGAGGACAGAGAGTTTTCTGTAAAGGTGCTTCTGAAATAATATTAAAAATGTGCGACAAAATAATTGATTGCAATGGAGTACCTGTTGATTTCCTTGAAAACCATGCTAAGGAATTGAATCATATAATAAATACTTTTGCATCTGAAACTTTGAGAACTATTTGTATAGCTATCAAAGATATAGATGTAATCCCTACTGAAGCAAACATCCCTGATAATGGCTACACACTGATAGCGGTTGTAGGAATCAATGACCCTATACGCCTTGGTGTCAAAGAAGTTGTTCAAACTTGTTTAGCAGCTGGAGTGACCATTGCTATGGTTACTGGTGATAGTATGAGCATAGCTAGGACTATTGCTACAGAATGTG 1138 0.384 MLAAAVGMRTHWGKLVEYLNDRGVEETPLQVKLNGVATVVGKIGLSFALLTFIVLIIRFLVEIAIHGKFYNWSSKDTMKLLNYFTIVVTMIVIAVPEGLPLAVTLNLAFAMKSLTSDKALVRHLSACEAMGSASYICLDKTGTVTSNHMVVDKLWISGEVVEMEGTENGDKLKRKISEEVLNLLLQALFQNNASEMVKDIQGKITVLGTPTDSALLEFGLLLGGDFDVQCRLYKKLKTEPFNPVQKKMSVLVSLPNGGQRVFCKGASEIILKMCDKIIDCNGVPVDFLENHAKELNHIINTFASETLRTICIAIKDIDVIPTEANIPDNGYTLIAVVGINDPIRLGVKEVVQTCLAAGVTIAMVTGDSMSIARTIATEC 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9175g00001 379 Pfam E1-E2 ATPase 3 115 - -
Trme9175g00001 379 SUPERFAMILY Calcium ATPase, transmembrane domain M 24 131 IPR023298 -
Trme9175g00001 379 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 143 347 IPR023299 GO:0000166
Trme9175g00001 379 SUPERFAMILY HAD-like 134 378 IPR036412 -
Trme9175g00001 379 Gene3D - 1 148 - -
Trme9175g00001 379 Gene3D - 149 342 IPR023299 GO:0000166
Trme9175g00001 379 ProSitePatterns E1-E2 ATPases phosphorylation site. 139 145 IPR018303 -
Trme9175g00001 379 PRINTS P-type cation-transporting ATPase superfamily signature 137 151 - -
Trme9175g00001 379 PRINTS P-type cation-transporting ATPase superfamily signature 357 367 - -
Trme9175g00001 379 PRINTS P-type cation-transporting ATPase superfamily signature 335 346 - -
Trme9175g00001 379 FunFam Calcium-transporting ATPase 147 342 - -
Trme9175g00001 379 PANTHER CATION TRANSPORTING ATPASE 1 379 - -
Trme9175g00001 379 Pfam Cation transport ATPase (P-type) 194 277 - -
Trme9175g00001 379 NCBIfam HAD-IC family P-type ATPase 52 160 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9175g00001 Trme-Chr9175 27 1164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9175g00001 1 379 Primary Pumps ATPases AT2G41560 60.789 4.30e-158 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9175g00001 K01537 - qsa:O6P43_010118 512.686