Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9168g00001 CTTAGCAAACGTACTACAACAGAGAATCTGAGGGCAGCATTTCAAAAGTTTGGTGAAGTTGTTCATGCTAGGGTGGTAACTGATCGAGTCTCTGGTTACTCTAAAGGGTTTGGTTTTGTGCAATATGCTACTCTAGAAGATGCTGCTAAGGGCATCGAAGGCATGGATGGCAAGGTAAGATTTATTAAACCCTTATGCTTGCAACTCTTGCAGGAAGACTGA 222 0.4279 LSKRTTTENLRAAFQKFGEVVHARVVTDRVSGYSKGFGFVQYATLEDAAKGIEGMDGKVRFIKPLCLQLLQED 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9168g00001 73 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 72 IPR000504 GO:0003723
Trme9168g00001 73 PANTHER NUCLEOLAR PROTEIN 8 1 58 - -
Trme9168g00001 73 Gene3D - 1 71 IPR012677 -
Trme9168g00001 73 SMART rrm1_1 1 68 IPR000504 GO:0003723
Trme9168g00001 73 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 59 IPR000504 GO:0003723
Trme9168g00001 73 SUPERFAMILY RNA-binding domain, RBD 1 59 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9168g00001 1 71 Eukaryotic Initiation Factors Gene Family AT1G49760 39.437 2.84e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9168g00001 - - psat:127105180 111.309