Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9132g00001 ATGCAGCCACTCGTTAGGTCTGTTCTCGATGGTTTTAATGTTTGCATATTTGCTTATGGCCAAACAGGATCAGGAAAAACTTTCACCATGACTGGACTTAAAAAAACCATGACTGGACCAAAAGAGATCACAGAAAAAAGCCAAGGTGTAAATTACAGGGCTCTAAAAATTCGTAGTAACTCTCAAAGAGGGCTCAGTGTACCAGATGCAAGCCTTGTCCAAGTATCATCAACAAATGATGTTATTGAACTAATGAACTTGGGCCATAAGAACCGTGCAGTCGGAGCAACAGCCCTTAATGATCGTAGTAGCCGATCTCACAGTTGCTTGACTGTTCATGTTCAAGGAAGAGACTTGACATCTGGAGCTGTCCTACGTGGATGCATGCATCTCGTTGACTTGGCAGGAAGTGAGAGGGTCGACAAATCTGAGGCGACAGGTGATAGACTGAAAGAGGCACAGCATATAAACAAATCTCTTTCAGCTTTGGGTGATGTCATAGCTTCTCTTGCTCAGAAAAACCAACATGTACCTTATAGAAATAGCAAACTCACGCAATTACTCCAAGATTCGCTTGGTAAGNTNNNNNNNNNNGGTATTCTAATAGGCTCTGGAAAATATAGGACAACGGCTAGCGAACTTTCACCCTATCATGCAAGCCAGCGGGCGGCAGATATTGTGGATGGTCCCTTTGGGTGCCGGCAACCAATGTTTGATGTTGGCAACTTAGAG 732 0.4331 MQPLVRSVLDGFNVCIFAYGQTGSGKTFTMTGLKKTMTGPKEITEKSQGVNYRALKIRSNSQRGLSVPDASLVQVSSTNDVIELMNLGHKNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGAVLRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNQHVPYRNSKLTQLLQDSLGKXXXXGILIGSGKYRTTASELSPYHASQRAADIVDGPFGCRQPMFDVGNLE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9132g00001 244 Gene3D Kinesin motor domain 1 52 IPR036961 -
Trme9132g00001 244 PRINTS Kinesin heavy chain signature 128 146 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme9132g00001 244 PRINTS Kinesin heavy chain signature 11 32 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme9132g00001 244 PRINTS Kinesin heavy chain signature 177 198 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme9132g00001 244 PRINTS Kinesin heavy chain signature 97 114 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme9132g00001 244 ProSiteProfiles Kinesin motor domain profile. 1 193 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme9132g00001 244 Pfam Microtubule binding 2 38 IPR031852 GO:0008017
Trme9132g00001 244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 196 IPR027417 -
Trme9132g00001 244 PANTHER KINESIN-LIKE PROTEIN KLP-3 1 56 IPR027640 GO:0003777|GO:0007018
Trme9132g00001 244 SMART kinesin_4 1 234 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme9132g00001 244 Pfam Kinesin motor domain 51 195 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme9132g00001 244 Gene3D Kinesin motor domain 53 214 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9132g00001 Trme-Chr9132 16 1674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9132g00001 4 193 Calmodulin-binding Proteins AT5G65930 42.152 3.08e-44 157