Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme91298g00001 ATGTCGTCACATGTGTCTTTTACTGTACTGGACTTGCTGCTGTTTTCATCAATATTTCGGTTGAAAATTTTGCTGGCTGGAATGTATTCCTCTGTATATATCATCACACAATTTTCACCAGCAGCTGCCGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAACGGAGTTGATACTCACGGCATCCTTCTTTTCAGAACTTTGATTGGAAAGGTATTTGGAAGCATTGGTTCAGTGGGGGGAGGCCTCGCTTTGGGTAAAGAAGGTCCT 270 0.4259 MSSHVSFTVLDLLLFSSIFRLKILLAGMYSSVYIITQFSPAAAGSGIPEIKGYLNGVDTHGILLFRTLIGKVFGSIGSVGGGLALGKEGP 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme91298g00001 90 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 90 - -
Trme91298g00001 90 PRINTS Chloride channel signature 71 90 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme91298g00001 90 PRINTS Chloride channel signature 40 57 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme91298g00001 90 Gene3D Clc chloride channel 2 90 - -
Trme91298g00001 90 Pfam Voltage gated chloride channel 30 90 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme91298g00001 90 SUPERFAMILY Clc chloride channel 10 90 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme91298g00001 Trme-Chr91298 1 634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme91298g00001 18 90 Ion Channels AT5G26240 79.452 2.65e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme91298g00001 K05016 - nnu:104596497 125.946