Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme9125g00001 | ATGGTTCCATTGCAGGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTCAATCAACTAGCAACACTTGTCTCCCAGCAAGGGGAGGTTGCCATCAGGATTGATGAGAACATGGATGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCATTGTTGAAGTATTTGAATAGCATATCGTCTAATAG | 227 | 0.4405 | MVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSN | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme9125g00001 | 75 | Gene3D | - | 2 | 61 | - | - | |
| Trme9125g00001 | 75 | SMART | tSNARE_6 | 1 | 68 | IPR000727 | - | |
| Trme9125g00001 | 75 | ProSitePatterns | Syntaxin / epimorphin family signature. | 12 | 51 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Trme9125g00001 | 75 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 6 | 68 | IPR000727 | - | |
| Trme9125g00001 | 75 | PANTHER | SYNTAXIN | 5 | 72 | IPR045242 | - | |
| Trme9125g00001 | 75 | CDD | SNARE_syntaxin5 | 9 | 75 | - | - | |
| Trme9125g00001 | 75 | SUPERFAMILY | t-snare proteins | 4 | 61 | IPR010989 | GO:0016020|GO:0016192 | |
| Trme9125g00001 | 75 | Pfam | SNARE domain | 43 | 75 | IPR000727 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme9125g00001 | 1 | 75 | SNARE and Associated Proteins | AT3G24350 | 81.333 | 9.89e-39 | 129 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme9125g00001 | K08490 | - | sind:105164795 | 144.821 |