Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9119g00001 ATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATATAGTTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAAACTTCCAAAGGACATGCTGATCAATCTGTTTAATAGTCTGGAAACAACTTCCGCTATATGTTGTGTCTGCAATGATCCACCCGATGACTCTGTTATTTCGATGTGTGGCCATGTCTTCTGTTATCAATGCGTATCAGAACATTTGACAGGTGATGATAATATGTGCCCTGCAGTTCATTGTAAAGAACAACTTGGTGAAGATCTTGTTTTCTCCAAAGCAACTTTGAGGAGTTGCATCTCTGACGATCTTGGTGGCAGTAGTTCTGGAAATTCGAGTCTTGTTGATTATTCACTAGTACAGAACAGTGACTACAGCTCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCATTCAAATTGCAAATTGAAGACTCCTTTACTGAATTCCTCCGAAGGAAATAGAGATTCACTGCCTTCTGATGATTCAGATATTGAAGATTTTGATTCAGATGTCAAG 555 0.3928 MLLRLRQACDHPLLVKEYSSDPVGKDSVEMAKKLPKDMLINLFNSLETTSAICCVCNDPPDDSVISMCGHVFCYQCVSEHLTGDDNMCPAVHCKEQLGEDLVFSKATLRSCISDDLGGSSSGNSSLVDYSLVQNSDYSSSKIKAVLEVLHSNCKLKTPLLNSSEGNRDSLPSDDSDIEDFDSDVK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9119g00001 185 MobiDBLite consensus disorder prediction 160 185 - -
Trme9119g00001 185 Pfam Zinc finger, C3HC4 type (RING finger) 52 95 - -
Trme9119g00001 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 116 IPR013083 -
Trme9119g00001 185 SMART ring_2 53 91 IPR001841 -
Trme9119g00001 185 ProSitePatterns Zinc finger RING-type signature. 68 77 IPR017907 -
Trme9119g00001 185 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Trme9119g00001 185 SUPERFAMILY RING/U-box 50 112 - -
Trme9119g00001 185 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9119g00001 Trme-Chr9119 93 1677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9119g00001 1 151 RAD5 or RAD16-like Gene Family AT1G50410 63.576 1.29e-60 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9119g00001 - - gmx:100811598 265.388