Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme91008g00001 AAAAGTGCGGCCGAGTTTGTTCAAGCTGCCCTTCACGAGATCGATGTTCTTTTATCTATTGCTGACGGCGACCCATCAAATTCAAAGTTCGTTGTCCAATTGATTGATCACTTCAAGCACACAGGTCCAAATGGACAGCACCAATGCATGGTCCTTGAATTCCTTGGTGATAGCTTGCTTCGTTTGATCAGATATAACCGTTACAAAGGTCTTCCGTTGAATAAAGTTAGAGAGATCTGCAAATACGTTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACTGACTTAAAACCTGAAAACATTCTTCTATTATCAACTATCGATCATTCCAAAGACCCTTTTAGATCCGGAGGCTCCCCAATTTTAGAACGACCTGAGGGAAACACAAACGGTGGAATTACGAGTCTTATTGAGAAAAGGTTGAAGAGGAGAGCAAGGAGTGCAGTTGCTAAAATATCTGGAAGAACAGCTTCAATTGAAGGAAGAGGAGAAGCTGCAAAGTCTAGTAGAAATATTAATGGGGTTGACATGAGATGCAAGATTGTCGATTTTGGAAATGCATGTTGGGCTGATAAGCAGTTTGCAGAAGAAATACAGACGAGGCAGTATAGAGCCCCTGAAGTTATATTGAAGTCCGGTTAT 657 0.4094 KSAAEFVQAALHEIDVLLSIADGDPSNSKFVVQLIDHFKHTGPNGQHQCMVLEFLGDSLLRLIRYNRYKGLPLNKVREICKYVLIGLDYLHSELGIIHTDLKPENILLLSTIDHSKDPFRSGGSPILERPEGNTNGGITSLIEKRLKRRARSAVAKISGRTASIEGRGEAAKSSRNINGVDMRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILKSGY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme91008g00001 219 Gene3D Phosphorylase Kinase; domain 1 1 50 - -
Trme91008g00001 219 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 156 219 - -
Trme91008g00001 219 ProSitePatterns Serine/Threonine protein kinases active-site signature. 96 108 IPR008271 GO:0004672|GO:0006468
Trme91008g00001 219 SMART serkin_6 1 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme91008g00001 219 SUPERFAMILY Protein kinase-like (PK-like) 5 219 IPR011009 -
Trme91008g00001 219 Gene3D Transferase(Phosphotransferase) domain 1 51 219 - -
Trme91008g00001 219 ProSiteProfiles Protein kinase domain profile. 1 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme91008g00001 219 Pfam Protein kinase domain 9 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme91008g00001 Trme-Chr91008 1 657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme91008g00001 1 219 EF-hand Containing Proteins AT5G22840 42.435 9.17e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trme91008g00001 Pkinase 2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme91008g00001 K08832 - gmx:100784192 378.252