Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme90913g00001 AAAAAAAATGAAGGGTTAGAGGAAGCAAATTTTCCAGCTGTGGTTAGTTCTCCAGCAGAGTTTAGGTGTGTAAGGGTTAGCTCAATTGATGATGCAGATGATAGGTATGCCTATCAAACGGCTGTAAACATTGGAGGACATTTGTTCAAAGGAATTCTCTATGACTTTGGTCCAGAAACTAGTAGCAACAATAACAACAACAATAATTATAATAGTAGTAATTACATGATTGGAGAGACTTCTGGTGGCAGCGGTGTTGGTGTCGCTCAGCCGTTGAACCTAATCACCGACTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNCTGCCCCGATTAACGCCTTCATGACGGCTAGTGGTACGCAATTCTTCCCTCGCCCGAGATCTTGA 420 0.3643 KKNEGLEEANFPAVVSSPAEFRCVRVSSIDDADDRYAYQTAVNIGGHLFKGILYDFGPETSSNNNNNNNYNSSNYMIGETSGGSGVGVAQPLNLITDXXXXXXXXXXXXXXXXXXXXXXAPINAFMTASGTQFFPRPRS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme90913g00001 139 Pfam Domain of unknown function (DUF702) 7 59 - -
Trme90913g00001 139 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 6 72 IPR007818 GO:0003700|GO:0006355
Trme90913g00001 139 NCBIfam LRP1 C-terminal domain 11 58 IPR006511 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme90913g00001 5 138 C2H2 Transcription Factor Family AT1G19790 42.647 2.53e-24 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trme90913g00001 DUF702 3.5e-23 No_clan