Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme908904g00001 | ATGGACAACGAAAGATATGAGAATGCTGTTAAAGTATGTGCTTTAGATAAGGATATTGGTGATTTTAGCTATGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACATAAGTGGAGGACAAAAGCAACGGATTCAACTAGCTAGAGCAGTCTACAACGATGCTGATATCTATCTCCTCGATGACCCTTTCAGTGCAGTTGATG | 205 | 0.3951 | MDNERYENAVKVCALDKDIGDFSYGDLTEIGQRGINISGGQKQRIQLARAVYNDADIYLLDDPFSAVD | 68 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme908904g00001 | 68 | Gene3D | - | 1 | 68 | IPR027417 | - | |
| Trme908904g00001 | 68 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 68 | IPR027417 | - | |
| Trme908904g00001 | 68 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 1 | 68 | - | - | |
| Trme908904g00001 | 68 | Pfam | ABC transporter | 28 | 64 | IPR003439 | GO:0005524 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme908904g00001 | Trme-Chr908904 | 1 | 205 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme908904g00001 | 9 | 68 | Calmodulin-binding Proteins | AT2G36910 | 45.000 | 8.11e-11 | 53.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme908904g00001 | - | - | lja:Lj3g3v2693530.1 | 129.798 |