Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme90655g00001 GTTGTTGGTGATTCTGCTGAAGGAGTTGAGAAAACAAAAGAAGCGATCAAAGTTTTGAAGACGATTGGAGCTTTTCCGGATGCTGAGAAAGCAAAAGATAGCCATGGAATTCGTCCTGGAAGGGGGAAAATGCGTAACCGACGATATATTTCACGAAAGGGACCGCTTATTGTTTATGGTACCGAAGGTGCGAAAGCGGTGAAAGCTTTTAGGAACATTCCCGGTGTGGAGATTACTAATGTGGAGAGATTGAATTTATTGAAACTTGCACCCGGTGGACATTTGGGTAGGTTTGTGGTTTGGACGAAATCGGCATTTGAGAAATTGGATTCGATTTATGGGTCATTTGAGAAAGCTTCTGAGAAGAAAAAGGGGTATGTTCTTCCTAGGGCTAAGATGGTGAACTCTGATTTGACTAGGATTATTAATTCTGATGAAGTTCAATCTGTTGTGAGGCCGATTAAGAAGGATGTTAAGCGTCTGTCGCTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTTAGGCTTAATCCTTATGCTAAGACTGCTAAGAGAATGGCTTTACTTGCTGAGGCTGAGAGGGTTAAGGCTAAGAAGGAGAAGCTTGACAAGAAGAGAAAGACTGTTTCCAAGGTGATGTTGATATCTATATATTGTGCTCAGTTTTGGTGA 675 0.4104 VVGDSAEGVEKTKEAIKVLKTIGAFPDAEKAKDSHGIRPGRGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFEKASEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPIKKDVKRLSLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKVMLISIYCAQFW 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme90655g00001 224 SUPERFAMILY Ribosomal protein L4 1 111 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trme90655g00001 224 PANTHER 60S RIBOSOMAL PROTEIN L4 1 209 IPR045240 -
Trme90655g00001 224 Coils Coil 186 206 - -
Trme90655g00001 224 Gene3D - 1 152 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trme90655g00001 224 Pfam 60S ribosomal protein L4 C-terminal domain 124 196 IPR025755 -
Trme90655g00001 224 Pfam Ribosomal protein L4/L1 family 9 110 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme90655g00001 Trme-Chr90655 1 675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme90655g00001 1 224 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 81.250 3.31e-119 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme90655g00001 K02930 - gmx:100779764 359.762