Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme90652g00001 GATTATGTTGACAGGGGTCAACACAGCCTTGAAACTATAAGCCTTCTGCTTGCTTTGAAGGTTGAGTATCCAAACAATGTTCATTTAATACGTGGAAACCACGAAGCTGCAGATATTAATGCCCTTTTTGGTTTTCGAATTGAGTGCATTGAGAGAATGGGTGAGAGAGATGGAATTTGGACATGGCACCGGATAAACCGTCTGTTTAATTGGCTTCCTCTTGCAGCTCTAATTGAGAAAAAAATTATTTGCATGCATGGGGGTATTGGTCGTTCAATAAATCACTTGGAACAAATTGAGAATATTCAGCGTCCTATTACAATGGAAGCAGGATCAATTGTGCTGATGGATCTATTGTGGTTAGTGCATTTCTATCCTCTTACATGTTGA 390 0.3949 DYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHLEQIENIQRPITMEAGSIVLMDLLWLVHFYPLTC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme90652g00001 129 SMART pp2a_7 1 128 IPR006186 GO:0016787
Trme90652g00001 129 SUPERFAMILY Metallo-dependent phosphatases 1 120 IPR029052 -
Trme90652g00001 129 PRINTS Serine/threonine phosphatase family signature 67 93 IPR006186 GO:0016787
Trme90652g00001 129 PRINTS Serine/threonine phosphatase family signature 29 53 IPR006186 GO:0016787
Trme90652g00001 129 Gene3D - 1 122 IPR029052 -
Trme90652g00001 129 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 120 - -
Trme90652g00001 129 Pfam Calcineurin-like phosphoesterase 1 120 IPR004843 GO:0016787
Trme90652g00001 129 ProSitePatterns Serine/threonine specific protein phosphatases signature. 30 35 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme90652g00001 Trme-Chr90652 72 629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme90652g00001 1 92 Calmodulin-binding Proteins AT5G63870 40.217 3.16e-17 73.9