Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9053g00001 AATAAGCCGAAGCCAAAAGCTGCTCCGAAAGCTTCTGCGTACACTGATGATATAGATCTTCCTCCCTCTGATGATGATGAGTCAGAAGAGGAGCTAGAGGAAAAGCATAGACCTGATGTGAAGCCACTTGAGGTGTCTATTGCTGAAAAAGAGTTGAAAAAGCGTGAAAAAAAAGATATTTTAGCTGCCCATGTGGCTGAACAGGCAAAGAAAGAAGCTCTTAAGGATGATCGTGATGCTTTCACTGTTGTCATTGGAAGTCGGGCTTCGGTGCTTGATGGAGACGATGGTGCTGATGCTAATGTTAAAGATATAACGATTGAAAATTTTTCTGTGTCTGCTCGAGGTAAAGAACTTCTGAAGAATGCATCAGTGAAGATATCTCATGGCAAGCGGTATGGTTTGGTTGGGCCGAATGGAATGGGAAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCGCTTGAAGCTGTTGTTTCGGCTAATATTGAACTTGTTAAAGTTCGACAAGAAGTTGCTGATCTACAGAATGTAGCTTCTGGTGAAGGTGTGGATAAAGATGATACTAATGAGGAAGAGGATGCAGGAGAAAAGCTAGCAGAGCTGTATGAACAATTACAGCTGATGGGGTCTGATGCTGCTGAATCTCAAGCGTCAAAAATTTTAGCTGGTCTGGGTTTTACAAAGGATATGCAGGTCCGTCCTACCAAATCCTTTAGTGGCGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCCACTCTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTCTGGTTAGAAGAGTACTTGTGTCGTTGGAAGAAAACTTTGGTCGTTGTATCACACGATAGAGATTTTCTCAATACAGTATGCTCTGAGATTATTCACCTGCATGATTGGAAACTTCATTTCTATCGTGGAAATTTTGATGCTTTTGAGACCGGGTATGAACAGCGTCGTAGAGAGGTGAATAAGAAGTATGAGACTTATGACAAGCAAATGAAAGCGGCTAGAAGGACTGGAAACAAGGCTCAACAAGATAAGGTGAAGGATCGAGCCAAGTTTGCAGCAGCTAAGGAAGCATCAAAAAGCAAAAGTAAGGGTAAGGTTGATGAGGATGAGGCCCAAGTAGAGGTACCACACAAGTGGAGGGACTACAGTGTAGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCACCACTTCTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACCGAGAGGATTTCAGACTCTCAGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTGCTAAATCTTCTAGCTGGTGATTTGGTTCCAAGTGTAGGTGAAGCTCGAAGGAGTCAGAAGTTGAGGATAGGGAGATACTCCCAACACTTTGTGGACCTACTAACAATGGACGAAACACCTGTTCAGTACCTTCTTCGTCTCCATCCAGACCAGGAGGGACTTAGTAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAATTTGGGTTACCTAGTCATAACCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAAGCTCGTGTGGTCTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCCACAAATCATCTGGATATG 1779 0.4373 NKPKPKAAPKASAYTDDIDLPPSDDDESEEELEEKHRPDVKPLEVSIAEKELKKREKKDILAAHVAEQAKKEALKDDRDAFTVVIGSRASVLDGDDGADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANIELVKVRQEVADLQNVASGEGVDKDDTNEEEDAGEKLAELYEQLQLMGSDAAESQASKILAGLGFTKDMQVRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDWKLHFYRGNFDAFETGYEQRRREVNKKYETYDKQMKAARRTGNKAQQDKVKDRAKFAAAKEASKSKSKGKVDEDEAQVEVPHKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSVGEARRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9053g00001 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 593 IPR027417 -
Trme9053g00001 593 MobiDBLite consensus disorder prediction 368 407 - -
Trme9053g00001 593 CDD ABCF_EF-3 105 333 - -
Trme9053g00001 593 FunFam ABC transporter F family member 4 103 386 - -
Trme9053g00001 593 Coils Coil 354 374 - -
Trme9053g00001 593 MobiDBLite consensus disorder prediction 1 41 - -
Trme9053g00001 593 Pfam ABC transporter 454 589 IPR003439 GO:0005524
Trme9053g00001 593 Gene3D - 102 386 IPR027417 -
Trme9053g00001 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 339 IPR027417 -
Trme9053g00001 593 Pfam ABC transporter 120 290 IPR003439 GO:0005524
Trme9053g00001 593 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 77 593 - -
Trme9053g00001 593 SMART AAA_5 129 344 IPR003593 GO:0016887
Trme9053g00001 593 SMART AAA_5 463 587 IPR003593 GO:0016887
Trme9053g00001 593 ProSitePatterns ABC transporters family signature. 262 276 IPR017871 GO:0005524|GO:0016887
Trme9053g00001 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 105 358 IPR003439 GO:0005524
Trme9053g00001 593 Gene3D - 399 593 IPR027417 -
Trme9053g00001 593 Coils Coil 181 201 - -
Trme9053g00001 593 FunFam ATP-binding cassette sub-family F member 2 425 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9053g00001 Trme-Chr9053 3 1781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9053g00001 436 592 Calmodulin-binding Proteins AT2G36910 29.834 8.73e-11 63.2