Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme90421g00001 ATGACAGCAATAGAAGAGATGGCGGGTATGGATGTATTATGCAGCGACAAAACTGGAACTTTGACTTTGAATAAACTATCTGTTGACAAGAATCTTATTGAGATTTTTGCTAAAGGAGTTGACGCAGATACCGTTGTTCTCATGGCTGCTCGGGCTTCTAGAGTAGAAAACCAAGATGCTATAGATGCTGCTATTGTAGGGATGTTAGGTGATCCGAAAGAG 222 0.4099 MTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEIFAKGVDADTVVLMAARASRVENQDAIDAAIVGMLGDPKE 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme90421g00001 74 SUPERFAMILY HAD-like 2 26 IPR036412 -
Trme90421g00001 74 Gene3D - 26 74 IPR023299 GO:0000166
Trme90421g00001 74 FunFam Phospholipid-transporting ATPase IC 11 23 - -
Trme90421g00001 74 ProSitePatterns E1-E2 ATPases phosphorylation site. 16 22 IPR018303 -
Trme90421g00001 74 PANTHER CALCIUM-TRANSPORTING ATPASE 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme90421g00001 Trme-Chr90421 371 678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme90421g00001 1 74 Primary Pumps ATPases AT5G62670 91.892 4.79e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme90421g00001 K01535 - cave:132183410 142.124