Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme90408g00001 TATTTAAAGCCATATGTGATATCAGAACCCGAGGTAACGGTAACGGAGAGAAAAGACGAAGATGAGTGTTTAATACTAGCGAGTGATGGATTATGGGATGTTGTTTCAAACGACACCGCATGTGGTGTTGTTAGGATGTGTTTGAAGGCACAGAAACTGCCGTCGCCACCCGGTTCTCCCGGTAACAACGATGTGACGACAGATGGTTCCGATCGTGCATGTTCTGATGCGTCAATTTTGTTGACTAAGTTGGCTTTGGCAAGACATAGTTCGGATAATGTTAGTGTGGTGGTGATTGATTTAAGGAGAGATCAACGACAATTATCAAATTCCAACAATAATTAA 345 0.4232 YLKPYVISEPEVTVTERKDEDECLILASDGLWDVVSNDTACGVVRMCLKAQKLPSPPGSPGNNDVTTDGSDRACSDASILLTKLALARHSSDNVSVVVIDLRRDQRQLSNSNNN 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme90408g00001 114 Pfam Protein phosphatase 2C 3 93 IPR001932 -
Trme90408g00001 114 Gene3D - 1 110 IPR036457 -
Trme90408g00001 114 CDD PP2Cc 1 101 IPR001932 -
Trme90408g00001 114 PANTHER PROTEIN PHOSPHATASE 1 101 IPR015655 GO:0004722|GO:0006470
Trme90408g00001 114 MobiDBLite consensus disorder prediction 51 70 - -
Trme90408g00001 114 ProSiteProfiles PPM-type phosphatase domain profile. 1 101 IPR001932 -
Trme90408g00001 114 MobiDBLite consensus disorder prediction 56 70 - -
Trme90408g00001 114 SUPERFAMILY PP2C-like 2 102 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme90408g00001 Trme-Chr90408 2 346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme90408g00001 1 103 PP2C-type Phosphatase Gene Family AT2G29380 66.019 4.21e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme90408g00001 K14497 - gmx:100776356 202.986