Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme90377g00001 ATGAATGTCTTCCGAGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTTGGAGTAACCTTTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAATTCGCCTCAACAGTGAGACTTGACTGGAAGCTGTGGCTTGCTTCTTTTTTAATTGGTATTGTCAGCTGGCCTCTTGCTATAGCTGGAAAATTAATTCCAGTTCCCAAAACACCGTTGTCGCGTTACTTCTTAAGGCC 236 0.4237 MNVFRGVTKNRLFMGIVGVTFILQIIIIEFLGKFASTVRLDWKLWLASFLIGIVSWPLAIAGKLIPVPKTPLSRYFLRP 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme90377g00001 79 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 67 IPR023298 -
Trme90377g00001 79 PANTHER CATION TRANSPORTING ATPASE 2 67 - -
Trme90377g00001 79 Gene3D - 1 70 - -
Trme90377g00001 79 Pfam Cation transporting ATPase, C-terminus 2 64 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme90377g00001 Trme-Chr90377 1 594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme90377g00001 1 79 Primary Pumps ATPases AT3G21180 78.481 7.00e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme90377g00001 K01537 - gmx:100777845 144.436