Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme90142g00001 ATGTGTGCCTTACATTACAAGGTAGGACAAAGGGGAGTTCAAGTATCGGGAGGTCAGAAACAAAGAATTGCAATTGCAAGAGCCATTCTGAAAAATCCTCCCATTCTTTTGCTTGACGAGGCCACTAGTGCCCTTGATTCAGAGTCGGAAAAGCTGNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTTGATTGCACACAGGCTCTCAACAGTTGTAAATGCAGATATGATTGCTGTAGTGGAGAATGGGCAAATTGTAGAGACAGGAACACACCAGAGTTTGTTGGACACAAGCAAATTCTATAGTACATTATTCAGCATGCAGAACCTTGAATCAGCTCCTGAACTAAG 365 0.3753 MCALHYKVGQRGVQVSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLXXXXXXXXXXXXXXXLIAHRLSTVVNADMIAVVENGQIVETGTHQSLLDTSKFYSTLFSMQNLESAPEL 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme90142g00001 121 Coils Coil 38 52 - -
Trme90142g00001 121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 113 IPR027417 -
Trme90142g00001 121 Gene3D - 5 118 IPR027417 -
Trme90142g00001 121 PANTHER ABC TRANSPORTER B FAMILY 7 112 IPR039421 -
Trme90142g00001 121 Pfam ABC transporter 7 43 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme90142g00001 Trme-Chr90142 23 387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme90142g00001 8 115 Calmodulin-binding Proteins AT2G36910 47.273 2.00e-27 103