Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9006g00001 GATTTCAACGGGTCTACTGATGACGCTGTTTACTTCCTGCAGAAGAAGTTGGAATATCTTGTCTCGAGCCGGCCAACTGCGGTGAACTTATCAGATACTGCGACAAAACTCAAAGAAATAATTTCTAAGGCTGCTGCTACCACTTCAGAGCCCAAAGGTGTTTTTCAGGCTTATCTAGAGGCTGCTGAAATAATGCTTGAGGATGATGTTGCATCAAACAGAGCAATTGGAAAATATGGAGCTAGTGTTATTCAAAACCAAAACGAAAAACAGAAGCTCTCTGTTTTGACCCATTGCAACACCGGAAGTTTAGCCACGGCTGGATATGGTACTGCTCTTGGTGTGATCCGTGCACTTCACAGCGGGGGAGTTTTAGAAAGGGCTTATTGCACAGAAACACGCCCATTCAATCAAGGATCCAGACTTACTGCGTATGAGTTGGTACATGACAAAATACCTGCAACTCTTATAGCAGATTCTGCTGCAGCTGCATTAATGCAAGCAGGACGTGTGGATGCTGTTGTTGTTGGCGCAGATCGTGTTGCCTCAAACGGTGACACAGCCAACAAAATTGGAACCTATAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCTTTTTATGTGGCTGCACCCTTAACTTCCATTGATCTATCACTTTCTTCTGGACAACAAATTGTCATTGAGGAGAGATCTCCCAAGGAATTGTTGAATACACGTGGAGGACTTGGAGAGCAGGTTGCTGCCTCAGGAATATCTGTGTGGAATCCGGCTTTTGATGTTACACCTGCAAATCTAATATCTGGGATCATCACTGAGAAGGGTGTTATTACAAAGACATCTGCTGGTGATGCTTTCGACATAAAAGCTTTTGTACAAAAAACAAGTTAA 891 0.4332 DFNGSTDDAVYFLQKKLEYLVSSRPTAVNLSDTATKLKEIISKAAATTSEPKGVFQAYLEAAEIMLEDDVASNRAIGKYGASVIQNQNEKQKLSVLTHCNTGSLATAGYGTALGVIRALHSGGVLERAYCTETRPFNQGSRLTAYELVHDKIPATLIADSAAAALMQAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGQQIVIEERSPKELLNTRGGLGEQVAASGISVWNPAFDVTPANLISGIITEKGVITKTSAGDAFDIKAFVQKTS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9006g00001 296 Gene3D - 71 277 IPR042529 -
Trme9006g00001 296 FunFam Methylthioribose-1-phosphate isomerase 2 125 - -
Trme9006g00001 296 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 6 288 IPR005251 -
Trme9006g00001 296 Gene3D - 5 70 IPR027363 -
Trme9006g00001 296 FunFam Methylthioribose-1-phosphate isomerase 91 289 - -
Trme9006g00001 296 SUPERFAMILY NagB/RpiA/CoA transferase-like 5 281 IPR037171 -
Trme9006g00001 296 Pfam Initiation factor 2 subunit family 13 278 IPR000649 GO:0044237
Trme9006g00001 296 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 12 279 IPR011559 GO:0044249
Trme9006g00001 296 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 8 279 IPR005251 -
Trme9006g00001 296 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 4 294 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9006g00001 2 296 Eukaryotic Initiation Factors Gene Family AT2G05830 75.338 3.27e-167 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme9006g00001 K08963 - gmx:100799311 494.967