Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme9003g00001 AGTATTAGACAAGTTAAGGAGAAAGATGGAACTACAAATCCATCTATCTACAAGGCAATTTATTTATTTGCTAGGAAGAAAGCGGCAATCAACGCACTTTTCGCGGTAATAAATGCTTCGGCGTCTTATGTTGGTCCGTATTTGATCACTGACTTTGTGAATTTCCTAACCGAGAAGGAAAGCCGCGGAGTAAAGAGCGGATACCTTTTGTCACTAGGTTTCTTATGTGCTAAAATGGTTGAGACCATAGCTCAAAGGCAATGGATTTTCGGTGCTCGGCAATTAGGTCTCCGCCTTAGAGCAGCATTGATATCTCATATATATAAGAAGGGCTTACATTTGTCTAGCCGATCACGTCAAAGTCATTCCGGTGGTGAGATAATGAACTACATGAGTGTAGATGTGCAGAGAATTACGGATTTCGTTTGGTATGTAAATGTAATATGGATGCTGCCGATACAAATTTCGTTAGCTGTTTTCATTTTGCATACAAATCTTGGATTAGGTTCATTGGCTGCATTAGCTGCGACGCTAGCAGTTATGACTTTAAACATACCCTTAACAAAAATACAGAAAAGATACCAAACCAAGATCATGGATGCAAAAGACAACAGAATGAAAGCAACATCAGAAATTCTAAAAAACATGAGGACTTTGAAACTTCAATCATGGGATAGTGAATTTTTCAAAAGGATAGAATCATTGAGAAGTGTTGAATATGGTTGGTTATTGAAGTCATTAAGACAAGCGGCGTTTTCCGCTTTTATCTTCTGGGGGTCACCTACATTCATTTCAGTGATAACCTTTTGGACATGCATGTTCTTAGGGATTGAACTGACAGCTGGAAGAGTCTTATCGGCATTCGCGACATTTCGAATGTTACAAGATCCTATCTTTAGTCTACCTGATTTACTCAATGTCATGGCTCAAGGAAAAGTTTCGGTTGATAGGATCGCTTCTTTCCTTAAGAAAGAAGAAATCCAACATGACGTGATCGAATATGTTTCAAAGGAGAAAACAGAATTTGATGTAGTTATTGAGAGAGGAAGATTCAGTTGGGATCCTGAGACAACAATTCCAACACTTGATGAAATTGAGTTGAAAGTTAAGAGAGGAATGAAGGTTGCAATTTGTGGTTCTGTCGGTTCCGGAAAAACTAGTATACTATCAGGAATTTTAGGAGAGATATATAAACAATCAGGAAATGTTAAGATTAGTGGAACAAAGGCTTATGTTCCACAATCTGCATGGATACTTACTGGAAATATAAGGGACAATATAACTTTTGGAAAAGAGTTTGATGAGGATAAGTATGAGAAAACTGTTGAAGCATGTGCATTGAAAAAGGACTTTGAGTTATTCTCAGGTGGTGATTTGACTGAGATTGGCGAAAGAGGGATTAATATGAGTGGTGGACAGAAACAAAGGATACAGATAGCTAGAGCTGTTTATCAAGATGCTGACATTTACCTTTTTGATGATCCTTTCAGTGCTGTTGATGCTCATACCGGCACTCACCTATTTAAGGAATGTCTTATGGGGATTCTCAAAGAGAAAACTATACTATTTGTTACACACCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTAAATGATGCTTGA 1629 0.3806 SIRQVKEKDGTTNPSIYKAIYLFARKKAAINALFAVINASASYVGPYLITDFVNFLTEKESRGVKSGYLLSLGFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYKKGLHLSSRSRQSHSGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLAVMTLNIPLTKIQKRYQTKIMDAKDNRMKATSEILKNMRTLKLQSWDSEFFKRIESLRSVEYGWLLKSLRQAAFSAFIFWGSPTFISVITFWTCMFLGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVMAQGKVSVDRIASFLKKEEIQHDVIEYVSKEKTEFDVVIERGRFSWDPETTIPTLDEIELKVKRGMKVAICGSVGSGKTSILSGILGEIYKQSGNVKISGTKAYVPQSAWILTGNIRDNITFGKEFDEDKYEKTVEACALKKDFELFSGGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTILFVTHQVEFLPAADLILVNDA 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme9003g00001 542 Pfam ABC transporter transmembrane region 30 294 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme9003g00001 542 CDD ABC_6TM_ABCC_D1 30 318 IPR044746 GO:0140359
Trme9003g00001 542 Gene3D ABC transporter type 1, transmembrane domain 3 327 IPR036640 GO:0005524|GO:0016020
Trme9003g00001 542 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 29 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme9003g00001 542 SMART AAA_5 371 542 IPR003593 GO:0016887
Trme9003g00001 542 FunFam ABC transporter C family member 5 329 542 - -
Trme9003g00001 542 ProSitePatterns ABC transporters family signature. 469 483 IPR017871 GO:0005524|GO:0016887
Trme9003g00001 542 FunFam ABC transporter C family member 10 12 326 - -
Trme9003g00001 542 SUPERFAMILY ABC transporter transmembrane region 25 326 IPR036640 GO:0005524|GO:0016020
Trme9003g00001 542 CDD ABCC_MRP_domain1 344 539 - -
Trme9003g00001 542 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 340 542 IPR003439 GO:0005524
Trme9003g00001 542 Gene3D - 339 542 IPR027417 -
Trme9003g00001 542 Pfam ABC transporter 362 496 IPR003439 GO:0005524
Trme9003g00001 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 539 IPR027417 -
Trme9003g00001 542 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 11 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme9003g00001 Trme-Chr9003 1 1751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme9003g00001 323 541 Calmodulin-binding Proteins AT2G36910 29.661 8.58e-20 91.7