Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8g00002 ATGTCTTCTTCTTCTCCCTTGACCTCCTCTTCTGAAATTCCTCTTCAAGAGACCGGCGATGTGTTTTTGTGTTACCATGACAACTACATTGCTAAATCTTTTTTATTGGATCTGAATTCCGCTCTCTCACAGGCTGGATTTAATGTTTACATGAACAATCACAGTCTTACAACCGAATATCAGACAAATTTCTCAGCATTGGAAGCTTCTAAAACTTCTATTATCGTTTTCTCAAGTAATTTTGACGCTTCAACATGGTTTCTAGAAGAATTGGAGAAGATATTGGAGTGCCGAAGAACCACACGGCAGGTGGTTATGCCTTTGTTCTATGATGTAGATCCCTCCGATGTACGCCAGCAGAAAGGAGTGTTTGCACAAAATTGGTGGTTCAGGAATAACAAGTCACGGCGTTATAGAGCCGCGCTCTCTGAAGTTGCCAACATGTTAGGATTTGATGTGAGGGATTCCAGGGACGAAAGTCAATGTATCAATCGCATAGTGCAAGCTTTGACTCGTTTGATACAAGACAAAGACTTATTTGTTGCTAAACACCCAGTTGGAGTAATAGCTCAGGTGCAAGATGTGATTCAACTATTGAACAATGGACAACCAGAACATACTATAATTGTAGGGATATGGGGGATGAACGGAGTTGGCAAAACAACCATTGCAAGAGCCACTTATAATCAAATGGGTTTCTTTTTTGAGGGCCAGAGCTTCCTCGAAAATGTTAATGAAATTTGGAATAGAGATGGTGACTTATCTTTACGGCAACAACTTCTTTCAGACATCTACAAACCAGAGGTACTGAATACGACTGCACCAAGTGGAATGGAGGAATTTCGTAAAACACTTTGCCGTAAGAAGATATTTCTTGTGCTTGACAATCTGAATAATTTGGATCAGTTGAATGCTTTGTGTGGTAGTCACGAATGGTTTGGTCATGGAAGTAGAATAATTATCACAACAAGAGATAGATCTTTACTTCATAGCCTTCCAGATGACCATGTATATAAAATGAAATATATGGATACTACTCAATCTCTTGAACTTTTTAGTTGGTATGCATTCAGAAAGTCGGGTCCTATAGAAAGTTACGCTAGCCTTTGTCAAGATGTTGTTCAGTACTGTGGTGGATGGCCACTAGCCCTTGAAGTCATTGGATCTTTTTTGTTCGGTAGACCTGCGGCGGAATGGGAGATTGTATGGGAGAAAATCAAAACCAATGGAAACCATGTCGTAATGGAGAAACTGAGAACAGGTTTTGATGATTTACAACGTGGGGAGAAAGAAATTTTCCTTAAAATAGCTACTTTATTTATTGGGATGGATAAAGATGATGTAATTCAGACTTTAGATTATGCTGACCCGGATATTGGAATAAGAGTCCTTGTAGATAAAAGCCTTGTAACTATAGATAGCAACAACAGGATAGGAATGCATACTTTGGTCCGAGCAATGGGAGGCGAAATCATAAGGCAACGGTCAATTGGTATGGCTGAGACGAAGATGTATGATGTGTTCTTGAGTTTCAGAGGGCCAGACAGTCGCGCAAAATTCATTGCACACCTGGGTTCCTCTCTTCAAAATGCTGGGATTCATGTTTTCAAAGACGAGGATGGGATTCGACGAGGAGATAAGATCTCAGAGTCATTGTTGGAAGCAATCACTCAGTCTAGTATTTCTGTTGTTGTTTTCTCAAGAAGTTATGCTAATTCAAAATGGTGTATGATGGAGTTGGAGAAAATTGTGGAAATGAGTAGAACCAAGGGTATGGTGGTTGTGCCTGTGTTTTATGAGGTAGATCCCACGGATGTACGCAATCAGACAGGAGACTTTGGAAAAGAATTTGATTCTCTTATATCAACAACAGAAGTGAATGAATACACGAAAATTCCAACAAAAGTCTATGAATACAAAAAGTGGATCTGGAAAACAGCACTCAAAGAAGTTGGTAACAATGCAGGGGCTGTCGTCATAAAATCCAGGGATGAAAACGAGGATGTCAAGAAAATAGTTGAATCTGTTACTCTTTTGCTAGACAAGACAAAATTATTTGTTGCTGACCATCCAGTGGGAGTAGAATCACGGGTACAAGATGTTATTAAACTACTGAACAGTCAAAAATCAAAAGAACCTCTATTACTAGGGATATGGGGCATGGGAGGGATAGGAAAAACAACCATTGCTAAAGCTGTTTATAATGAAATTCATCGTGATTTTGAGGCAAAGAGTTTCCTATTTAATGTCAGGGAATCATGGAAACTAGATAATGACAAAGTTGCTTTACAACAACAACTTCTTTCTGATATCTACAAAACTACAAAGATAAAGATTGGTACAATTGACTCAGGAAAAAATATATTACCGGAAATACTTAGTCAGAAAAGGATATTTCTTGTAATTGATGATGTGAATAAAGAGGATCAATTGAATACTTTGTGTGGAAATCGAAAATGGTTTGGTGAGAGAAGTATAATAATCATCACAACAAGAGATAAGGATTTACTTAGTAGGCTTGAAGTTGACCATGTATACAAAATGAAGGAGATGGATGATAGGGAATCTCTCGAGCTTTTTAACTGGCATGCATTCAAGCAACAAATTCCTAGTAATGCTTTCACTGAGCTTTCTAGGGATGTTGTTAAGTACTGTGGAGGACTGCCACTAGCTCTTAAAGTCATTGGGTCCTTTTTGGTGAATAAGAAAAGTGAAGCAGTGTGGAAGAGTGTACTGGAGAAACTCAAACTGATTCCCAACGTTGAAGTGTTAGAGAAGCTTAGAATAAGTTTTGATGGGTTAAGTGATTATGATGTGGAAGATATATTCCTTGATATTGCTTTTTTCTTTACCGGTATGGACCAGGAAGATGTAATTGAGATATTAAAAGATTGTGGCCATTTTCCAGAAATTGGAATAAGTATTCTCGTACAACAAAGCCTTGTAACTGTTGATAGGGAAAACAAGATTGGAATGCATGATTTGCTACGAGACATGGCAAGAGAGATTGTCAGCAAGAAATCTAAAGAGGGGAGCAAGGAGCCTAATAGATTATGGCGCTATGAGGATGTGCGTGAGTTGCCAAAAGATACTATTTCTCTATATGTTAAGGGATTGACTTTAAAGATGCCAAGACTGGAGTCACCAACTTGTTTACAAACTAAAGAATTTGAGAAGATGAACAGGCTTAAATTGCTTCAATTTGCTGGCGTAAAACTTGATGGAGATTACAAATATCTTTCAAAAGATCTCAGGTGGCTTTGTTGGCATGGATTTCCTTTACAATTTACACCTAAAGACCTTCATCAAGGAAGTTTAGTTGCTCTTGACTTACAATACTCATATCTAAAACAAGTGTGGAGGGAGGATCAGTTGCTAGTGAAGCTGAAAATTCTTAATCTTAGTCATTCTCAACTCTTGAGACATACTCCAGACTTTTCAAACTTGCCAAATCTTGAAAAGTTAATACTTGAGGATTGTCCGAGTTTGTCTTCGGTTTGTTCTACTATAGGACAGGCCAGAAAAATTCAGCTTATAAATTTGAAAGATTGTACAGGCCTTCGTGAACTTCCAAAGAGCATCTATACATTAGACTCGGTTAAAACTCTCATTCTATCTGGATGTACACAAATTGACAAGTTGGAAGAAGATATAGAACAGATGAAATCTTTAACCACCTTGGATGGGGATAACACTGCTATCACAAGAGTGCCTTTTGCAGTAAAAATGCGGACTCCCATTGGGTCTGGTTTGCTCCCTGGTGATAACTATCCCGATTGGCTAACCTTCAATAGCAACAGTTCTTCTGTATCTTTTGAAGTACCTCAAGTGGAGGGGCGTTCTTTGAAGACAATCATGTGCATTATTGTCTATTCTTCTTCCCCAGACAATACAACAACAGAAAGTTTTGAAGTTTTGTTGGGAGTAATAAATTGCACAAAGGACACCAAACAAGTATACAATATAGACAGATCATTAGCACTTTTTGACGAGGAGGAGTGGCAGAGTTTAATATCAAATATAGAACCTGGAAACAAAATTGATGTGATTGTTGGTTTTACAAATGAATTCATTGTGAAGGAAACAACAATTTATCTTGTATATGATGAACCAAATGAGGAACAGACGAATGACTCCCATGAGACAGATGAGAACGACATTGTTTCTAGTGGTAATGAAAATTTAGGATGCAACTATTTTGATTGGTATAATGCAGAAGTTGCGGAAAAGGATTTGATTATCATGAAGCAAAAAAGGAGATTGGAGGTACTAACACGAGTAAGTGATGAACAAGACCAACAATTGGTTGAAGAAAGGAAAAAAGTGCTTGAACAAAATGAAAGAATTGATGAACAAAATCAGAAGATTGTTGGACTTGAGAGTGGACTCGACACTACAATGAAATGGATGAAAATTTGGAGGAATTGTACTTTGGTTTTAGTAATGGTGTTAATGTATAAAATGATGGTGTGA 4473 0.378 MSSSSPLTSSSEIPLQETGDVFLCYHDNYIAKSFLLDLNSALSQAGFNVYMNNHSLTTEYQTNFSALEASKTSIIVFSSNFDASTWFLEELEKILECRRTTRQVVMPLFYDVDPSDVRQQKGVFAQNWWFRNNKSRRYRAALSEVANMLGFDVRDSRDESQCINRIVQALTRLIQDKDLFVAKHPVGVIAQVQDVIQLLNNGQPEHTIIVGIWGMNGVGKTTIARATYNQMGFFFEGQSFLENVNEIWNRDGDLSLRQQLLSDIYKPEVLNTTAPSGMEEFRKTLCRKKIFLVLDNLNNLDQLNALCGSHEWFGHGSRIIITTRDRSLLHSLPDDHVYKMKYMDTTQSLELFSWYAFRKSGPIESYASLCQDVVQYCGGWPLALEVIGSFLFGRPAAEWEIVWEKIKTNGNHVVMEKLRTGFDDLQRGEKEIFLKIATLFIGMDKDDVIQTLDYADPDIGIRVLVDKSLVTIDSNNRIGMHTLVRAMGGEIIRQRSIGMAETKMYDVFLSFRGPDSRAKFIAHLGSSLQNAGIHVFKDEDGIRRGDKISESLLEAITQSSISVVVFSRSYANSKWCMMELEKIVEMSRTKGMVVVPVFYEVDPTDVRNQTGDFGKEFDSLISTTEVNEYTKIPTKVYEYKKWIWKTALKEVGNNAGAVVIKSRDENEDVKKIVESVTLLLDKTKLFVADHPVGVESRVQDVIKLLNSQKSKEPLLLGIWGMGGIGKTTIAKAVYNEIHRDFEAKSFLFNVRESWKLDNDKVALQQQLLSDIYKTTKIKIGTIDSGKNILPEILSQKRIFLVIDDVNKEDQLNTLCGNRKWFGERSIIIITTRDKDLLSRLEVDHVYKMKEMDDRESLELFNWHAFKQQIPSNAFTELSRDVVKYCGGLPLALKVIGSFLVNKKSEAVWKSVLEKLKLIPNVEVLEKLRISFDGLSDYDVEDIFLDIAFFFTGMDQEDVIEILKDCGHFPEIGISILVQQSLVTVDRENKIGMHDLLRDMAREIVSKKSKEGSKEPNRLWRYEDVRELPKDTISLYVKGLTLKMPRLESPTCLQTKEFEKMNRLKLLQFAGVKLDGDYKYLSKDLRWLCWHGFPLQFTPKDLHQGSLVALDLQYSYLKQVWREDQLLVKLKILNLSHSQLLRHTPDFSNLPNLEKLILEDCPSLSSVCSTIGQARKIQLINLKDCTGLRELPKSIYTLDSVKTLILSGCTQIDKLEEDIEQMKSLTTLDGDNTAITRVPFAVKMRTPIGSGLLPGDNYPDWLTFNSNSSSVSFEVPQVEGRSLKTIMCIIVYSSSPDNTTTESFEVLLGVINCTKDTKQVYNIDRSLALFDEEEWQSLISNIEPGNKIDVIVGFTNEFIVKETTIYLVYDEPNEEQTNDSHETDENDIVSSGNENLGCNYFDWYNAEVAEKDLIIMKQKRRLEVLTRVSDEQDQQLVEERKKVLEQNERIDEQNQKIVGLESGLDTTMKWMKIWRNCTLVLVMVLMYKMMV 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8g00002 1490 Pfam TIR domain 505 652 IPR000157 GO:0007165
Trme8g00002 1490 Pfam TIR domain 20 170 IPR000157 GO:0007165
Trme8g00002 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 435 IPR027417 -
Trme8g00002 1490 Pfam NB-ARC domain 695 916 IPR002182 GO:0043531
Trme8g00002 1490 Pfam NB-ARC domain 191 412 IPR002182 GO:0043531
Trme8g00002 1490 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 505 1233 IPR044974 GO:0006952
Trme8g00002 1490 SMART till_3 18 148 IPR000157 GO:0007165
Trme8g00002 1490 SMART till_3 504 654 IPR000157 GO:0007165
Trme8g00002 1490 Gene3D - 343 426 IPR042197 -
Trme8g00002 1490 Gene3D - 850 935 IPR042197 -
Trme8g00002 1490 PRINTS Disease resistance protein signature 885 899 - -
Trme8g00002 1490 PRINTS Disease resistance protein signature 715 730 - -
Trme8g00002 1490 PRINTS Disease resistance protein signature 1147 1163 - -
Trme8g00002 1490 PRINTS Disease resistance protein signature 792 806 - -
Trme8g00002 1490 Gene3D - 15 180 IPR035897 -
Trme8g00002 1490 Gene3D - 499 686 IPR035897 -
Trme8g00002 1490 Gene3D Ribonuclease Inhibitor 1032 1242 IPR032675 -
Trme8g00002 1490 SUPERFAMILY Toll/Interleukin receptor TIR domain 501 653 IPR035897 -
Trme8g00002 1490 SUPERFAMILY L domain-like 1046 1239 - -
Trme8g00002 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 945 IPR027417 -
Trme8g00002 1490 SUPERFAMILY "Winged helix" DNA-binding domain 922 1027 IPR036390 -
Trme8g00002 1490 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 151 IPR035897 -
Trme8g00002 1490 Gene3D - 181 337 IPR027417 -
Trme8g00002 1490 Gene3D - 687 847 IPR027417 -
Trme8g00002 1490 ProSiteProfiles TIR domain profile. 503 680 IPR000157 GO:0007165
Trme8g00002 1490 FunFam Disease resistance protein (TIR-NBS-LRR class) 501 682 - -
Trme8g00002 1490 SMART AAA_5 206 344 IPR003593 GO:0016887
Trme8g00002 1490 SMART AAA_5 712 855 IPR003593 GO:0016887
Trme8g00002 1490 Coils Coil 1435 1455 - -
Trme8g00002 1490 ProSiteProfiles TIR domain profile. 17 174 IPR000157 GO:0007165
Trme8g00002 1490 SUPERFAMILY "Winged helix" DNA-binding domain 415 496 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8g00002 Trme-Chr8 1319 10067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8g00002 186 496 WRKY Transcription Factor Family AT5G45050 32.063 3.99e-41 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8g00002 - - tpra:123891787 1421.37