Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89924g00001 TACTCGCCATTGTCCTTCAGCCAGAGAATAAGAGTTGCAGTTGAAGTTGCAAGATGTCTTTTATACCTACATGATCGAGGGCTTCCCCATGGAAATCTGAAGCCGACAAATATTCTGTTAGCAGGCCCTGAATACAGTGTTTGTCTTACTGACTACGGTTTGCACCGGCTCATGACACCAGCTGGAGTTGCAGAGCAGATGCTAAATCTAGGAGCACTCGGATACCGTGCTCCAGAACTTGCTTCTGCTTCCAAACCACTTCCATCCTTTAAGGCCGATGTGTATGCACTTGGGGTGATCCTAATGGAATTATTAACAAGAAAAAGTGCTGGTGACATAATATCTGGACAATCAGGTGCTGTCGATCTTACAGATTGGGTTAGGCTGTGTGAAAGAGAAGGAAGGGTAATGGACTGTATAGACAGAGACATTGCAGGTGGCGAAGAATCCTCTAAAGAGATGGACCAACTGCTTGCAACATCTCTCAGGTGTATTCTCCCTGTAAATGAAAGGCCCAACATCAGACAAGTTTTTGAAGATCTCTGTTCTATATCATCAGCTTGA 564 0.4468 YSPLSFSQRIRVAVEVARCLLYLHDRGLPHGNLKPTNILLAGPEYSVCLTDYGLHRLMTPAGVAEQMLNLGALGYRAPELASASKPLPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESSKEMDQLLATSLRCILPVNERPNIRQVFEDLCSISSA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89924g00001 187 SUPERFAMILY Protein kinase-like (PK-like) 3 181 IPR011009 -
Trme89924g00001 187 SMART serkin_6 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme89924g00001 187 Pfam Protein kinase domain 10 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme89924g00001 187 PANTHER OS07G0626500 PROTEIN 1 186 - -
Trme89924g00001 187 Gene3D Transferase(Phosphotransferase) domain 1 1 187 - -
Trme89924g00001 187 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme89924g00001 187 FunFam Pollen receptor-like kinase 1 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme89924g00001 Trme-Chr89924 1 564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89924g00001 4 184 Receptor kinase-like Gene Family AT3G51740 36.022 1.97e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme89924g00001 Pkinase 1.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89924g00001 - - gmx:100802768 349.362