Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme898g00001 ATGTATGCTAATGCTATGAATGGAGAAATAGCCATCTTTTTCATTTCTTGCATTGGATGGCGTTGGATTTTGGAAAGAAAATTAGCTTCTTCGGATGTGCCAACTGAAGAACGGCTCAACCTCATCAAAGATTTAGAGAGGAAGGAAACTGAATATATGCGATTGAAAAGGCACAAAATTTGTGTTGATGATTTTGAGCTCTTGACTATCATTGGAAGGGGGGCTTTTGGGGAGGTTAGACTGTGTCGGGAGAAGAAATCTGGAAATATCTATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTTAGGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTACTGGCCGAAGTCGCCAGTCACTGCATTGTGAAACTTTACTACTCATTTCAGGATACTGAATACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGACATTATGACTCTGCTGATGAGGGAAGACACCTTAAGTGAGAATATGGCTAGATTTTACATGGCACAGAGTGTGCTGGCCATAGAGTCTATTCATAAACACAATTACATTCACAGAGATATTAAACCCGATAACCTACTTCTGGATAAAAACGGCCACATGAAGCTATCTGATTTTGGCCTCTGTAAGCCTATTGATTGCATTACCTTGCCTACACTGCATGAAAATCAGACCATGGATGATGAAACTTTGGCAGAGCCAATGGATGTTGATAGCTGTGTTCCTGATGCGGACAATAGGAAAAGCTGGAGAAGTCCGCGTGAGCAGCTTCATCATTGGCAGATGAACAGGAGGAAGTTGGCATTTTCAACAGTGGGGACGCCAGATTACATTGCTCCTGAAGTACTTTTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTACGAAATGCTGGTTGGTTACCCTCCATTTTACTCTGATGACCCAATAACCACATGCAGAAAG 969 0.42 MYANAMNGEIAIFFISCIGWRWILERKLASSDVPTEERLNLIKDLERKETEYMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASHCIVKLYYSFQDTEYLYLIMEYLPGGDIMTLLMREDTLSENMARFYMAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPIDCITLPTLHENQTMDDETLAEPMDVDSCVPDADNRKSWRSPREQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme898g00001 323 Gene3D Phosphorylase Kinase; domain 1 56 150 - -
Trme898g00001 323 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme898g00001 323 SMART serkin_6 65 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme898g00001 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Trme898g00001 323 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Trme898g00001 323 FunFam Non-specific serine/threonine protein kinase 26 148 - -
Trme898g00001 323 CDD MobB_NDR_LATS-like 21 60 - -
Trme898g00001 323 SUPERFAMILY Protein kinase-like (PK-like) 47 321 IPR011009 -
Trme898g00001 323 Pfam Protein kinase domain 263 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme898g00001 323 Pfam Protein kinase domain 66 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme898g00001 323 Gene3D Transferase(Phosphotransferase) domain 1 151 323 - -
Trme898g00001 323 PANTHER SERINE/THREONINE-PROTEIN KINASE 46 323 - -
Trme898g00001 323 PIRSF ILK 254 323 - -
Trme898g00001 323 PIRSF ILK 39 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme898g00001 Trme-Chr898 43 2734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme898g00001 21 323 AGC Kinase Gene Family AT4G33080 86.139 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trme898g00001 Pkinase 9.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme898g00001 K08790 - gmx:100815717 590.112