Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89841g00001 ATGGCTATTGTAGCTACTTCATACATCTCAATTCTTTGCATTTTTCTTAGCTTATGCCTTAAAGGCACTTTTGGTGACTATGGAGGTGGATGGGAAAGTGCTCATGCCACATTTTATGGTGGTGGAGATGCATCAGGCACAATGGGAGGGGCTTGTGGTTATGGAAATTTATATAGCCAAGGATATGGAACCAACACTGCTGCACTAAGCACTGCTCTTTTCAACAATGGATTGAGTTGTGGATCTTGCTATGAGATGAGATGTGACAGTG 271 0.4244 MAIVATSYISILCIFLSLCLKGTFGDYGGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDS 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89841g00001 90 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Trme89841g00001 90 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Trme89841g00001 90 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Trme89841g00001 90 SUPERFAMILY Barwin-like endoglucanases 27 88 IPR036908 -
Trme89841g00001 90 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 90 IPR007112 -
Trme89841g00001 90 Gene3D - 20 90 IPR036908 -
Trme89841g00001 90 PANTHER EXPANSIN-A15 13 89 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme89841g00001 Trme-Chr89841 1 520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89841g00001 10 90 Expansin Gene Family AT2G40610 75.309 1.98e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89841g00001 K20628 - mnt:21394504 155.606