Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8983g00001 ATGGAAGAAGAAATGAAATCATTTACGGATCTGGGCTTATCTTTTGAATTGGTGGAAGCTTGTGAAAAAAAACTGCATTGGTATAATCCTCTTAAGATTCAGACAGAAGTGATTCCCCTTGCGCTACAAGGAAAAGATGATGTGATTGGAATTTCCCCACCGCGTTCTGGTAAGTCTGGGGATTTTGTTCTTCCTATATCGCAGTCCCTTTTAGAAGCCGGACCTAACCTAAACACTTTCTTTGCTTGTGTGCTGTCTCCCACAAGGAAACTTGCTATTCAAATTGGTGACTACTTTCAAGCTCTAGGTTCTCAGTTTGGTGTCAAGTGTGCTGTCCTTTTTGAAGCCACGAACTTGGTACATCAATCCATTCAGATTTCACAGCAACCTCATATTATTGTTGGGACCCCTGGACAAGTCTTTAATAACCTAAAACATACCGAAGGATTTGCTCTTGCTCTTGCTAGTTTAAAATACGTGGTCATAGATGAGGCACACCTGCTGTTGAATGATCACTTTGAGGAACAGCTAAATGAGATTTTACGAATGATTCCTAGTGAACGGAGAACATTTCTTTTTTCATCTAAAATCACAGAGAAGGTCCATGCTATCCAAAGTGCGTGTTTAAGGAATCCTGTGAAGATTGACGTATCTTCCAAATATTCTACTATGGTCACACTGCAGCAGCATAGTTGCTTTATGTCAGCAAAACATAAGGATTGCTACCTTGTATACACTCTCACTGAAATGGCTGGAAGAACATCAATGGTATTCACTCAGCGTTGTGGTTCAGCGCTTCTTCTGGCTTTGATTCTTAAGAGTCTTGGTTTCAGAGCCATCCCTATTATTAGCTATATGAGTCAGGCAAAGAAACTTGGAGCCTTGAATGCGTTCAAGTCTGGGGAGTGCAATATTCTCCTTTGTAGTGAGGTAGCTATTAAGGCT 945 0.4085 MEEEMKSFTDLGLSFELVEACEKKLHWYNPLKIQTEVIPLALQGKDDVIGISPPRSGKSGDFVLPISQSLLEAGPNLNTFFACVLSPTRKLAIQIGDYFQALGSQFGVKCAVLFEATNLVHQSIQISQQPHIIVGTPGQVFNNLKHTEGFALALASLKYVVIDEAHLLLNDHFEEQLNEILRMIPSERRTFLFSSKITEKVHAIQSACLRNPVKIDVSSKYSTMVTLQQHSCFMSAKHKDCYLVYTLTEMAGRTSMVFTQRCGSALLLALILKSLGFRAIPIISYMSQAKKLGALNAFKSGECNILLCSEVAIKA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8983g00001 315 Gene3D - 1 218 IPR027417 -
Trme8983g00001 315 Gene3D - 222 314 IPR027417 -
Trme8983g00001 315 SMART ultradead3 26 230 IPR014001 -
Trme8983g00001 315 Pfam Helicase conserved C-terminal domain 242 312 IPR001650 -
Trme8983g00001 315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 217 IPR027417 -
Trme8983g00001 315 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 215 IPR014001 -
Trme8983g00001 315 PANTHER RNA HELICASE 3 312 - -
Trme8983g00001 315 Pfam DEAD/DEAH box helicase 32 197 IPR011545 GO:0003676|GO:0005524
Trme8983g00001 315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 312 IPR027417 -
Trme8983g00001 315 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 6 35 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8983g00001 Trme-Chr8983 841 1785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8983g00001 47 312 Eukaryotic Initiation Factors Gene Family AT5G11170 26.667 3.76e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8983g00001 K14777 - gmx:100775796 385.571