Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89681g00001 GGGCTTGGTTTGAACCTAACATCTGCAGATACACTTGTTTTTGTGGAGCATGACTGGAATCCTATGCGCGATCTTCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAAAARGTAGTTARTGTTCACCGTCTGATAATGCGTGGTACATTGGAAGAGAAAGTTATGAGTYTACAACGGTTTAAAGTGTCAGTTGCTAATGCGGTCATTAATGCGGAAAATGCTAGTTTGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAGTCCCCAAGAAGGTACGAACACATGTTTATGTCGTGTAA 318 0.4057 GLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVXVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLDLFASAEVPKKVRTHVYVV 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89681g00001 105 CDD SF2_C_SNF 1 46 - -
Trme89681g00001 105 Gene3D - 1 101 IPR027417 -
Trme89681g00001 105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 91 IPR027417 -
Trme89681g00001 105 Coils Coil 105 105 - -
Trme89681g00001 105 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 96 IPR044972 GO:0003677|GO:0016887|GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme89681g00001 Trme-Chr89681 1 656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89681g00001 1 90 RAD5 or RAD16-like Gene Family AT1G02670 39.560 7.19e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89681g00001 K15192 - gmx:100784852 182.185