Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89662g00001 GGAGCTTGTGGATACGAGGATGTGGTTAAAGATGGTTATGGTTTAGACACAGTAGCATTGAGTACAGTTTTGTTCAACAAAGGTCTAGCATGTGGTGCATGTTATGAAATAAAATGTATGGACTCTCCTCAAGGGTGTAAGCAAGGGCAACCCTCTCTTTTTGTGACGGCAACTGACCTCTGTCCTCCCAATTATGCCCTACCAAGTGACAATGGAGGATGGTGCAACCCACCACGTGAACACTTTGATTTAGCCAAACCAGCTTATGAAAAAATTGCTGACTGCAAAGCTGGAATTGTGCCAGTCCAATATCGCAGGTCACATACATAA 330 0.4394 GACGYEDVVKDGYGLDTVALSTVLFNKGLACGACYEIKCMDSPQGCKQGQPSLFVTATDLCPPNYALPSDNGGWCNPPREHFDLAKPAYEKIADCKAGIVPVQYRRSHT 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89662g00001 109 SMART dpbb_1 17 104 IPR007112 -
Trme89662g00001 109 Gene3D - 1 108 IPR036908 -
Trme89662g00001 109 PANTHER EXPANSIN-A15 1 106 IPR002963 GO:0009664
Trme89662g00001 109 SUPERFAMILY Barwin-like endoglucanases 1 106 IPR036908 -
Trme89662g00001 109 PRINTS Expansin/Lol pI family signature 21 39 IPR007118 GO:0005576
Trme89662g00001 109 PRINTS Expansin/Lol pI family signature 97 109 IPR007118 GO:0005576
Trme89662g00001 109 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 109 IPR007112 -
Trme89662g00001 109 PRINTS Expansin signature 39 50 IPR002963 GO:0009664
Trme89662g00001 109 PRINTS Expansin signature 89 102 IPR002963 GO:0009664
Trme89662g00001 109 PRINTS Expansin signature 53 63 IPR002963 GO:0009664
Trme89662g00001 109 PRINTS Expansin signature 12 26 IPR002963 GO:0009664
Trme89662g00001 109 PRINTS Expansin signature 72 89 IPR002963 GO:0009664
Trme89662g00001 109 Pfam Lytic transglycolase 17 104 IPR009009 -
Trme89662g00001 109 CDD DPBB_EXPA_N 1 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme89662g00001 Trme-Chr89662 365 694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89662g00001 1 106 Expansin Gene Family AT2G39700 65.094 1.04e-51 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89662g00001 - - twl:119989663 188.734