Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8964g00001 ATGCTCAAAAATGATGCTATCAAGTTTTGCCAGGAGAACAATTTCAATTCAGGATTTTTTGAGGGTAGTGATAGCAACACTGTTGTTGATGCATATGAATTGAAGGTCAGACTTGAGCATATCCTTGAAAGGATTACATTGATATCTGAGGCTGCAAATACAGAGAGACCATCTGCTGTTACAAGTAATTTGTTCATCGGTGGAGCACAATCTGCAAGATCTGTATACACAATGCAACACTTGGGAATCACTCATATTTTGTGTTTGTGTACTAATGAAATTGGACAATCAGATTCTCAATTTCCTGATCTGTTTACTTACAAAAATTTCTCTGTGTGTGATACTGAGAATTCTGACATCGGCGTCTTATTTGACGAAGCTTGTGATTTTATAGAAGATGTTGAGAGAGGAGGTCAGAGAATTTTAATTCATTGCTTCGAAGGGAAAAGCAGAAGTGTCACTGTGCTCCTTGCTTACTTGATGCTCAGAAAGAACTTCACATTATTAGAAGCATGGAATGCTATGAGAAAAGTTCACCGTCGAGCGCARCCTAATGATGGTTTTGCAAAGATCTTACAAGMACTTGATMAAAAMCTGCAYGGGAARGTTTCGATGGAGTGGCAGCGGCGGAAACCAACAATGAAAGTTTGTCCTATATGTGGCAAGAATGCTGGACTGAGCAGCAGCTCACTTAAGCTACATCTTCAGAAATCTCATAAAAGGCTATCATCAGGGAGTGTTGATAGTGCCATGACAATGGAAATCCAAAAGGCATTAACCACTTTGAATATTAGCCGTGGTGGGAGTGTGAGCCCCAAACAAAGGCAAACTCACTCAATGACAGACTAA 849 0.3946 MLKNDAIKFCQENNFNSGFFEGSDSNTVVDAYELKVRLEHILERITLISEAANTERPSAVTSNLFIGGAQSARSVYTMQHLGITHILCLCTNEIGQSDSQFPDLFTYKNFSVCDTENSDIGVLFDEACDFIEDVERGGQRILIHCFEGKSRSVTVLLAYLMLRKNFTLLEAWNAMRKVHRRAQPNDGFAKILQXLDXXLHGKVSMEWQRRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKALTTLNISRGGSVSPKQRQTHSMTD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8964g00001 282 Gene3D Protein tyrosine phosphatase superfamily 38 211 IPR029021 -
Trme8964g00001 282 CDD DSP 57 193 - -
Trme8964g00001 282 Pfam Dual specificity phosphatase, catalytic domain 65 192 IPR000340 GO:0008138|GO:0016311
Trme8964g00001 282 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 281 IPR035010 GO:0004721|GO:0009737|GO:0043622
Trme8964g00001 282 FunFam Dual specificity protein phosphatase PHS1 28 202 - -
Trme8964g00001 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 125 177 IPR000387 GO:0016311|GO:0016791
Trme8964g00001 282 SMART dsp_5 56 198 IPR020422 GO:0006470|GO:0008138
Trme8964g00001 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 56 200 IPR029021 -
Trme8964g00001 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 56 201 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8964g00001 Trme-Chr8964 95 1718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8964g00001 2 267 Protein tyrosine phosphatase (PTP) family AT5G23720 72.556 1.42e-135 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8964g00001 K14165 K17614 ahf:112770730 456.832