Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme89612g00001 AACAACAACAACAATTTCACATCTCCTCAAGATCATGAAGTAATCAAAGAGCAAGATCGTTTACTTCCAATAGCTAATGTTGGAAGAATCATGAAACAAATCTTGCCACCAAATGCAAAAATCTCAAAAGAAGCTAAAGAAACCATGCAAGAGTGTGTTTCTGAGTTTGTTAGCTTTGTAACTGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGAGAAAGACAGTTAATGGTGATGATGTTTGTTGGGCCATGACAAACCTAGGGTTTGATGATTACTCTGAGCCACTCAAAAGGTATTTGTATAAATATAGAGAATTAGATGTGGAAAGAGGAAACCAAAGTAAGGGTAACAAATAA 360 0.3611 NNNNNFTSPQDHEVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWAMTNLGFDDYSEPLKRYLYKYRELDVERGNQSKGNK 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme89612g00001 119 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 110 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trme89612g00001 119 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 85 IPR003958 -
Trme89612g00001 119 SUPERFAMILY Histone-fold 18 116 IPR009072 GO:0046982
Trme89612g00001 119 FunFam Nuclear transcription factor Y subunit B-3 10 119 - -
Trme89612g00001 119 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Trme89612g00001 119 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Trme89612g00001 119 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Trme89612g00001 119 Gene3D Histone, subunit A 10 119 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme89612g00001 Trme-Chr89612 3 362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme89612g00001 14 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 80.198 4.69e-60 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trme89612g00001 CBFD_NFYB_HMF 2.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme89612g00001 K08065 - gmx:100817274 204.912